Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq190 470 4e-130 seq187 392 1e-106 seq4 230 7e-58 seq6 123 7e-26 >seq190 Length=155293 Score = 470 bits (520), Expect = 4e-130 Identities = 406/498 (82%), Gaps = 4/498 (1%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 103070 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 103129 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| |||| |||||||||||||||| |||||||| | || |||| Sbjct 103130 GTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACATGCCGCGAATCCTC 103189 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 | || | ||||| | || |||||| || | ||||||| ||||||| ||||||||| Sbjct 103190 TTGAAAGAGAGGGGTGCC-TTCGGGA-ACGCGGACACAGGTGGTGCATGGCTGTCGTCAG 103247 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 |||||| ||| || ||||||||||||||||||||||||||||||||| | |||||||| Sbjct 103248 CTCGTGCCGTAAGGTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTGTTTAGTTGC 103307 Query 241 CATCA-TTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGA 299 || | || || | || || || || |||||||||||| || ||||||||||||| ||| Sbjct 103308 CAACCGTTGAGGTTGGAACCCTGAGCAGACTGCCGGTGATAAGCCGGAGGAAGGTGAGGA 103367 Query 300 CGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATA 359 |||||||| ||||||||||||||||| ||||| |||||||||||||||||| | | Sbjct 103368 TGACGTCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGCCGGGA 103427 Query 360 CAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATT 419 ||||||| | || |||||||| ||| || ||| ||| || ||||||||||||| Sbjct 103428 CAAAGGGTCGTGATCCCGCGAGGGTGAGCTAACTCCAAAAACCCGTCCTCAGTTCGGATT 103487 Query 420 GTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCT 478 |||| |||||||||| || ||||||| ||||||||||||||||| | |||| ||| | Sbjct 103488 GTAGGCTGCAACTCGCCTGCATGAAGCCGGAATCGCTAGTAATCGCCGGTCAGCCATACG 103547 Query 479 ACGGTGAATACGTTCCCG 496 |||||||| |||||||| Sbjct 103548 GCGGTGAATTCGTTCCCG 103565 Score = 464 bits (514), Expect = 2e-128 Identities = 405/498 (81%), Gaps = 4/498 (1%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||||||||| |||||||||| |||||||||| Sbjct 138839 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGAGGTGGAGCAT 138780 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| |||| |||||||||||||||| |||||||| | || |||| Sbjct 138779 GTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACATGCCGCGAATCCTC 138720 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 | || | ||||| | || |||||| || | ||||||| ||||||| ||||||||| Sbjct 138719 TTGAAAGAGAGGGGTGCC-TTCGGGA-ACGCGGACACAGGTGGTGCATGGCTGTCGTCAG 138662 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 |||||| ||| || ||||||||||||||||||||||||||||||||| | |||||||| Sbjct 138661 CTCGTGCCGTAAGGTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTGTTTAGTTGC 138602 Query 241 CATCA-TTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGA 299 || | || || | || || || || |||||||||||| || ||||||||||||| ||| Sbjct 138601 CAACCGTTGAGGTTGGAACCCTGAGCAGACTGCCGGTGATAAGCCGGAGGAAGGTGAGGA 138542 Query 300 CGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATA 359 |||||||| ||||||||||||||||| ||||| |||||||||||||||||| | | Sbjct 138541 TGACGTCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGCCGGGA 138482 Query 360 CAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATT 419 ||||||| | || |||||||| ||| || ||| ||| || ||||||||||||| Sbjct 138481 CAAAGGGTCGTGATCCCGCGAGGGTGAGCTAACTCCAAAAACCCGTCCTCAGTTCGGATT 138422 Query 420 GTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCT 478 |||| |||||||||| || ||||||| ||||||||||||||||| | |||| ||| | Sbjct 138421 GTAGGCTGCAACTCGCCTGCATGAAGCCGGAATCGCTAGTAATCGCCGGTCAGCCATACG 138362 Query 479 ACGGTGAATACGTTCCCG 496 |||||||| |||||||| Sbjct 138361 GCGGTGAATTCGTTCCCG 138344 >seq187 Length=1555935 Score = 392 bits (434), Expect = 1e-106 Identities = 395/506 (78%), Gaps = 23/506 (5%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGA--------CGGGGACCCGCACAAGCGG 52 |||| |||||| |||||||||||||| | ||||| ||||||||||||| Sbjct 661874 TACGTTCGCAAGAATGAAACTCAAAGGATCAGTTCTTCGCTCGGGGGCCCGCACAAGCGG 661933 Query 53 TGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCT 112 |||||||||||||||||||||| |||| |||||||||||||||| | || ||||||| Sbjct 661934 TGGAGCATGTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGC-CGCGA-ATCCTCT 661991 Query 113 GACCCCTCTAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTT 172 || ||||| | ||| |||||||| || | ||||||| ||||||| | Sbjct 661992 T-----TCAAGAGA--GGGGTG---CCTTCGGGA-ACGCGGACACAGGTGGTGCATGGCT 662040 Query 173 GTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGC 232 |||||||||||||| ||| || | ||||||||||||||||||||||||||||||| Sbjct 662041 GTCGTCAGCTCGTGCCGTAAGGTCTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTCT 662100 Query 233 TTAGTTGCCATCA-TTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAA 291 |||||||||| | || || | || || || || |||||||||||| || ||||||||| Sbjct 662101 TTAGTTGCCAACCGTTGAGGTTGGAACCCTGAGCAGACTGCCGGTGATAAGCCGGAGGAA 662160 Query 292 GGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAAT 351 |||| ||| |||||||| ||||||||||||||||| ||||| |||||||||||||||| Sbjct 662161 GGTGAGGATGACGTCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAAT 662220 Query 352 GGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAG 411 || | |||||||| | || |||||||| ||| || ||| ||| || ||||| Sbjct 662221 GGCCGGGACAAAGGGTCGTGATCCCGCGAGGGTGAGCTAACTCCAAAAACCCGTCCTCAG 662280 Query 412 TTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCA 471 |||||||| ||| |||||||||| || ||||||| ||||||||||||||||| | ||| Sbjct 662281 TTCGGATTCTAGGCTGCAACTCGCCTGCATGAAGCCGGAATCGCTAGTAATCGCCGGTCA 662340 Query 472 G-CATGCTACGGTGAATACGTTCCCG 496 | ||| | |||||||| |||||||| Sbjct 662341 GCCATACGGCGGTGAATTCGTTCCCG 662366 Score = 197 bits (218), Expect = 4e-48 Identities = 186/236 (79%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATG 326 ||||||| |||| | || ||||||||||||||| |||||||| || |||| |||||||| Sbjct 168417 GACTGCCAGTGATATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATG 168476 Query 327 ATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAA 386 ||||| |||||||||||||||||| | ||||| ||| ||| | | | ||| | Sbjct 168477 GGCTGGGCCACACACGTGCTACAATGGCAATTACAATGGGAAGCAAGGCTGTAAGGCGGA 168536 Query 387 GCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGC 446 || ||| || |||| | ||||||||||||||| ||||||||||| | |||||| Sbjct 168537 GCGAAT-CCGGAAAGATTGCCTCAGTTCGGATTGTTCTCTGCAACTCGGGAACATGAAGT 168595 Query 447 TGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTCCCGCTCCCT 502 |||||||||||||||||| ||||||||||| ||||||||| || |||| |||| Sbjct 168596 TGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATATGTACCCGGGCCCT 168651 Score = 197 bits (218), Expect = 4e-48 Identities = 186/236 (79%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATG 326 ||||||| |||| | || ||||||||||||||| |||||||| || |||| |||||||| Sbjct 919372 GACTGCCAGTGATATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATG 919431 Query 327 ATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAA 386 ||||| |||||||||||||||||| | ||||| ||| ||| | | | ||| | Sbjct 919432 GGCTGGGCCACACACGTGCTACAATGGCAATTACAATGGGAAGCAAGGCTGTAAGGCGGA 919491 Query 387 GCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGC 446 || ||| || |||| | ||||||||||||||| ||||||||||| | |||||| Sbjct 919492 GCGAAT-CCGGAAAGATTGCCTCAGTTCGGATTGTTCTCTGCAACTCGGGAACATGAAGT 919550 Query 447 TGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTCCCGCTCCCT 502 |||||||||||||||||| ||||||||||| ||||||||| || |||| |||| Sbjct 919551 TGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATATGTACCCGGGCCCT 919606 Score = 163 bits (180), Expect = 9e-38 Identities = 175/232 (75%), Gaps = 21/232 (9%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| ||||||||||||||||||||||| || |||||||||||||||||| Sbjct 167897 TACGGTCGCAAGACCGAAACTCAAAGGAATTGACGGGGGCCTGCACAAGCGGTGGAGCAT 167956 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| ||||||| | |||||||||| ||||| | Sbjct 167957 GTGGTTTAATTCGATACAACGCGCAAAACCTTACCAGCCCTTGA---------------C 168001 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAG-AGT----GACAGGTGATGCATGGTTGTC 175 | || ||| | | | |||| |||| | | | ||||||| ||||||| |||| Sbjct 168002 TCGAAATA-AAGAATGTCCTTAACGGGATGGTAATTTCATACAGGTGCTGCATGGCTGTC 168060 Query 176 GTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCT 227 ||||||||||||||||||||||| ||| |||||| |||||||| |||||| Sbjct 168061 GTCAGCTCGTGTCGTGAGATGTTTGGTCAAGTCCTATAACGAGCGAAACCCT 168112 Score = 163 bits (180), Expect = 9e-38 Identities = 175/232 (75%), Gaps = 21/232 (9%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| ||||||||||||||||||||||| || |||||||||||||||||| Sbjct 918852 TACGGTCGCAAGACCGAAACTCAAAGGAATTGACGGGGGCCTGCACAAGCGGTGGAGCAT 918911 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| ||||||| | |||||||||| ||||| | Sbjct 918912 GTGGTTTAATTCGATACAACGCGCAAAACCTTACCAGCCCTTGA---------------C 918956 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAG-AGT----GACAGGTGATGCATGGTTGTC 175 | || ||| | | | |||| |||| | | | ||||||| ||||||| |||| Sbjct 918957 TCGAAATA-AAGAATGTCCTTAACGGGATGGTAATTTCATACAGGTGCTGCATGGCTGTC 919015 Query 176 GTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCT 227 ||||||||||||||||||||||| ||| |||||| |||||||| |||||| Sbjct 919016 GTCAGCTCGTGTCGTGAGATGTTTGGTCAAGTCCTATAACGAGCGAAACCCT 919067 >seq4 Length=23425844 Score = 230 bits (254), Expect = 7e-58 Identities = 236/307 (77%), Gaps = 1/307 (0%) Strand=Plus/Minus Query 156 ACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAAC 215 ||| ||| ||||||| ||||||||||||||| ||| || ||| | |||||| || |||| Sbjct 16637358 ACAAGTGGTGCATGGCTGTCGTCAGCTCGTGCCGTAAGGTGTCGAGTTAAGACCTACAAC 16637299 Query 216 GAGCGCAACCCTTAAGCTTAGTTGCCATC-ATTAAGTTGGGCACTCTAAGTTGACTGCCG 274 |||||||||| | | | |||||| ||| | ||| || | || || | ||| | || || Sbjct 16637298 GAGCGCAACCTTCATGTTTAGTTTCCAACCATTGAGGTTGGAACCATGAGTAAATTGTCG 16637239 Query 275 GTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGC 334 |||| || || |||||||||| ||| || ||||| ||||||||||||||||| ||||| Sbjct 16637238 GTGATAAGCCAGAGGAAGGTGAGGATGATGTCAAGTCATCATGCCCCTTATGCCCTGGGC 16637179 Query 335 TACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCC 394 ||||||||| || ||||| | |||||| | | || |||||| | ||| || | Sbjct 16637178 GACACACGTGTTATAATGGCCGGGACAAAGAGTTGTGATCCCGCGAAGGTGAGCTAACTC 16637119 Query 395 CATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCG 454 || || | | ||||||||||||||||| |||||||||| || |||||| ||||||| Sbjct 16637118 CAAAATCTCATCCTCAGTTCGGATTGTAGGCTGCAACTCGCCTGCATGAAGTCGGAATCG 16637059 Query 455 CTAGTAA 461 ||||||| Sbjct 16637058 CTAGTAA 16637052 >seq6 Length=29076228 Score = 123 bits (136), Expect = 7e-26 Identities = 196/276 (71%), Gaps = 15/276 (5%) Strand=Plus/Plus Query 221 CAACCCTTAAGCTTAGTTGCCA-TCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGAC 279 ||||| || | |||||||||| || || || | || || | ||| ||||| ||| | Sbjct 9584975 CAACCATTGTGTTTAGTTGCCAATCGTTGAGGTTGGAACCTTGAGTAGACTGTCGGCGGT 9585034 Query 280 AAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACAC 339 || || |||||||||| ||| ||| |||| ||||||||||||||||| ||||| || Sbjct 9585035 AAGCCAGAGGAAGGTGAGGATGACATCAAGTCATCATGCCCCTTATGCCCTGGGC--AAC 9585092 Query 340 ACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAA 399 |||||||| ||||| | | |||| | || | ||| || || ||| || Sbjct 9585093 ACGTGCTATAATGGCC--GAGAAAGAGTTATGATCTTGTGAG-----GCTAACTCCAAAA 9585145 Query 400 AGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGT 459 | || | | |||||||||| | ||||||||| || ||||||| | |||| ||||| Sbjct 9585146 ACCCGTCATTAATTCGGATTGTTGGTTGCAACTCGCCTGCATGAAGCCGAAATCACTAGT 9585205 Query 460 AATCGTAGATCAGC---ATGCTACGGTGAATACGTT 492 ||| |||| ||||| ||| | ||||||| |||| Sbjct 9585206 AATTGTAGGTCAGCCATATGGT--GGTGAATTCGTT 9585239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503997142400