Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27]
190 sequences; 195,669,205 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq17 291 1e-76
seq2 291 1e-76
seq4 248 1e-63
seq3 233 3e-59
seq5 183 5e-44
seq1 78.8 1e-12
>seq17
Length=15755
Score = 291 bits (322), Expect = 1e-76
Identities = 224/261 (86%), Gaps = 6/261 (2%)
Strand=Plus/Plus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 11280 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 11339
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119
|||||||||||||||||||||| | | || |||| | |||||||||||||||||| |
Sbjct 11340 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 11397
Query 120 CCACCAACCA-TAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177
|| | | || || |||| |||||||| | ||||||||||||||| |||||
Sbjct 11398 CCGCGGAGGGGTACCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAA 11457
Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 11458 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 11517
Query 238 AGAAAGAGCTATCAATCTGTC 258
|||||||||| ||| ||||||
Sbjct 11518 AGAAAGAGCTCTCAGTCTGTC 11538
>seq2
Length=23174626
Score = 291 bits (322), Expect = 1e-76
Identities = 224/261 (86%), Gaps = 6/261 (2%)
Strand=Plus/Minus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 12482466 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 12482407
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119
|||||||||||||||||||||| | | || |||| | |||||||||||||||||| |
Sbjct 12482406 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 12482349
Query 120 CCACCAACCA-TAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177
|| | | || || |||| |||||||| | ||||||||||||||| |||||
Sbjct 12482348 CCGCGGAGGGGTACCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAA 12482289
Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 12482288 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 12482229
Query 238 AGAAAGAGCTATCAATCTGTC 258
|||||||||| ||| ||||||
Sbjct 12482228 AGAAAGAGCTCTCAGTCTGTC 12482208
>seq4
Length=23425844
Score = 248 bits (274), Expect = 1e-63
Identities = 212/259 (82%), Gaps = 2/259 (1%)
Strand=Plus/Plus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || | | |||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 10169454 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGACATCAAAGA 10169513
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121
|||||||||| ||||||||||| | | || || | |||||||||||||||||| ||
Sbjct 10169514 CCTGTTATTGGCTCAAACTTCCTTGGCCTAAGAGGCCATAGTCCCTCTAAGAAGCTGACC 10169573
Query 122 ACCAACCA-TAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179
| | || || ||| ||||||||||||| |||||||||||| || ||||
Sbjct 10169574 GCGGAGGGGTACCTCCGCATAGCTGGTTAGCAGGTTAAGTTCTCGTTCGTTAACGTAATT 10169633
Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239
|||||||||||| || ||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 10169634 AACCAGACAAATTGCTACACCAACTAAGAACGACCATGCACCACCGCCCATAGAATCAAG 10169693
Query 240 AAAGAGCTATCAATCTGTC 258
|||||||| ||| | ||||
Sbjct 10169694 AAAGAGCTCTCAGTTTGTC 10169712
>seq3
Length=39782674
Score = 233 bits (258), Expect = 3e-59
Identities = 212/265 (80%), Gaps = 14/265 (5%)
Strand=Plus/Plus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || | | |||||||||| ||| |||| |||| || ||||||||||||||||||
Sbjct 21393332 ACTCGTTGAATACATCAGTGTAGCACGCATGCGACCCAAAAAATCTAAGGGCATCACAGA 21393391
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119
|||||||||||||||||||||| | | || |||| | |||||||||||||||||| |
Sbjct 21393392 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 21393449
Query 120 CCACCAA------CCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATC 173
| | | || | || ||| ||||||| | |||||| |||||||| |
Sbjct 21393450 TCGCGGAGGGGTACCCCTGCATAT----CTAGCTAGCAGGCTGAGGTCTTGTTCGTTAAC 21393505
Query 174 GGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGA 233
||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 21393506 AGAATTAACCAGACCAATTGCTCCACCAACTAAGAACGACCATGCACCACCACCCATAGA 21393565
Query 234 ATCAAGAAAGAGCTATCAATCTGTC 258
|||||||||||||| ||| ||||||
Sbjct 21393566 ATCAAGAAAGAGCTCTCAGTCTGTC 21393590
>seq5
Length=28023477
Score = 183 bits (202), Expect = 5e-44
Identities = 190/242 (79%), Gaps = 14/242 (6%)
Strand=Plus/Minus
Query 18 AGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 77
|||| | | || |||||||||| ||||||||||||||||| |||| ||||| ||||||||
Sbjct 1673496 AGTGCAACACGTGTGCGGCCCATAACATCTAAGGGCATCATAGACTTGTTAGTGCCTCAA 1673437
Query 78 ACTTCCATTGGCTGGAAGCCAAT---AGTCCCTCTAAGAAGCCAGCCACCAA---CCATA 131
|||||| ||||| || |||| |||| ||||||||| || || | || || |
Sbjct 1673436 ACTTCC-TTGGCCTAAA--CAATCGTAGTCTCTCTAAGAAACCGGCTGCAAAGTCCCCT- 1673381
Query 132 GTCG-ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAA 190
||| || | ||| |||| ||| ||||| | ||||||| | ||||||| |||||||
Sbjct 1673380 -TCGCATAG--CTAGTTAGTAGGCTAAGGGTTGGTTCGTTGACAAAATTAACTAGACAAA 1673324
Query 191 TCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATC 250
| ||||||||| |||||| | |||||| |||||||||||||||||||||||| |||||
Sbjct 1673323 TTGCTCCACCAAGTAAGAATGACCATGCCCCACCACCCATAGAATCAAGAAAGGGCTATT 1673264
Query 251 AA 252
||
Sbjct 1673263 AA 1673262
Score = 102 bits (112), Expect = 1e-19
Identities = 154/213 (72%), Gaps = 16/213 (8%)
Strand=Plus/Plus
Query 50 GGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCT 109
|| ||||| | |||| | |||| ||||||||||| | || | |||||||||||
Sbjct 2138411 GGTCATCATAAACCTATAATTGTCTCAAACTTCCTTAAACTAAGTGGTCATAGTCCCTCT 2138470
Query 110 AAGAAGCCAGCCACCAACCA-TAG--TCG-ATGGGGCTATTTAGCAGGTTAAGGTCTCGT 165
|||||| | ||| || || ||| || ||| |||||||||| | ||||| |
Sbjct 2138471 AAGAAGTG-GTCACAAAGGGGTACCTTCGCATAC--CTAGTTAGCAGGTTGAAGTCTCTT 2138527
Query 166 TCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCA 225
| ||||||| ||| ||||||||||||||||| | || | | |||||||||||
Sbjct 2138528 --------GAAATTAACTAGA-AAATCACTCCACCAACTGAAAAAGACAATGCACCACCA 2138578
Query 226 CCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
||||||||||||| |||||||| | | ||| ||
Sbjct 2138579 CCCATAGAATCAAAAAAGAGCTTTTAGTCTATC 2138611
>seq1
Length=29149675
Score = 78.8 bits (86), Expect = 1e-12
Identities = 88/116 (76%), Gaps = 4/116 (3%)
Strand=Plus/Minus
Query 3 CTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGAC 62
|||| || | | || || ||| || ||||| | ||||||||||||||| ||||||| ||
Sbjct 23285965 CTCGTTGAATACATCGGTATAGTGCACGTGCAGTCCAGAACATCTAAGGACATCACATAC 23285906
Query 63 CTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCA--ATAGTCCCTCTAAGAAGC 116
| ||||| ||||||||||| || | |||| | || ||||||||||||||
Sbjct 23285905 TTTTTATTACCTCAAACTTC--TTTGACCTAAGCGATCATGTTCCCTCTAAGAAGC 23285852
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796798533390
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |