Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq17 291 1e-76 seq2 291 1e-76 seq4 248 1e-63 seq3 233 3e-59 seq5 183 5e-44 seq1 78.8 1e-12 >seq17 Length=15755 Score = 291 bits (322), Expect = 1e-76 Identities = 224/261 (86%), Gaps = 6/261 (2%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11280 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 11339 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119 |||||||||||||||||||||| | | || |||| | |||||||||||||||||| | Sbjct 11340 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 11397 Query 120 CCACCAACCA-TAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177 || | | || || |||| |||||||| | ||||||||||||||| ||||| Sbjct 11398 CCGCGGAGGGGTACCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAA 11457 Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 11458 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 11517 Query 238 AGAAAGAGCTATCAATCTGTC 258 |||||||||| ||| |||||| Sbjct 11518 AGAAAGAGCTCTCAGTCTGTC 11538 >seq2 Length=23174626 Score = 291 bits (322), Expect = 1e-76 Identities = 224/261 (86%), Gaps = 6/261 (2%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 12482466 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 12482407 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119 |||||||||||||||||||||| | | || |||| | |||||||||||||||||| | Sbjct 12482406 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 12482349 Query 120 CCACCAACCA-TAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177 || | | || || |||| |||||||| | ||||||||||||||| ||||| Sbjct 12482348 CCGCGGAGGGGTACCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAA 12482289 Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 12482288 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 12482229 Query 238 AGAAAGAGCTATCAATCTGTC 258 |||||||||| ||| |||||| Sbjct 12482228 AGAAAGAGCTCTCAGTCTGTC 12482208 >seq4 Length=23425844 Score = 248 bits (274), Expect = 1e-63 Identities = 212/259 (82%), Gaps = 2/259 (1%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 10169454 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGACATCAAAGA 10169513 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||| ||||||||||| | | || || | |||||||||||||||||| || Sbjct 10169514 CCTGTTATTGGCTCAAACTTCCTTGGCCTAAGAGGCCATAGTCCCTCTAAGAAGCTGACC 10169573 Query 122 ACCAACCA-TAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 | | || || ||| ||||||||||||| |||||||||||| || |||| Sbjct 10169574 GCGGAGGGGTACCTCCGCATAGCTGGTTAGCAGGTTAAGTTCTCGTTCGTTAACGTAATT 10169633 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 |||||||||||| || ||||||||||||||| |||||||||||| |||||||||||||| Sbjct 10169634 AACCAGACAAATTGCTACACCAACTAAGAACGACCATGCACCACCGCCCATAGAATCAAG 10169693 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||| ||| | |||| Sbjct 10169694 AAAGAGCTCTCAGTTTGTC 10169712 >seq3 Length=39782674 Score = 233 bits (258), Expect = 3e-59 Identities = 212/265 (80%), Gaps = 14/265 (5%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||| ||| |||| |||| || |||||||||||||||||| Sbjct 21393332 ACTCGTTGAATACATCAGTGTAGCACGCATGCGACCCAAAAAATCTAAGGGCATCACAGA 21393391 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119 |||||||||||||||||||||| | | || |||| | |||||||||||||||||| | Sbjct 21393392 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 21393449 Query 120 CCACCAA------CCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATC 173 | | | || | || ||| ||||||| | |||||| |||||||| | Sbjct 21393450 TCGCGGAGGGGTACCCCTGCATAT----CTAGCTAGCAGGCTGAGGTCTTGTTCGTTAAC 21393505 Query 174 GGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGA 233 ||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||| Sbjct 21393506 AGAATTAACCAGACCAATTGCTCCACCAACTAAGAACGACCATGCACCACCACCCATAGA 21393565 Query 234 ATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||| ||| |||||| Sbjct 21393566 ATCAAGAAAGAGCTCTCAGTCTGTC 21393590 >seq5 Length=28023477 Score = 183 bits (202), Expect = 5e-44 Identities = 190/242 (79%), Gaps = 14/242 (6%) Strand=Plus/Minus Query 18 AGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 77 |||| | | || |||||||||| ||||||||||||||||| |||| ||||| |||||||| Sbjct 1673496 AGTGCAACACGTGTGCGGCCCATAACATCTAAGGGCATCATAGACTTGTTAGTGCCTCAA 1673437 Query 78 ACTTCCATTGGCTGGAAGCCAAT---AGTCCCTCTAAGAAGCCAGCCACCAA---CCATA 131 |||||| ||||| || |||| |||| ||||||||| || || | || || | Sbjct 1673436 ACTTCC-TTGGCCTAAA--CAATCGTAGTCTCTCTAAGAAACCGGCTGCAAAGTCCCCT- 1673381 Query 132 GTCG-ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAA 190 ||| || | ||| |||| ||| ||||| | ||||||| | ||||||| ||||||| Sbjct 1673380 -TCGCATAG--CTAGTTAGTAGGCTAAGGGTTGGTTCGTTGACAAAATTAACTAGACAAA 1673324 Query 191 TCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATC 250 | ||||||||| |||||| | |||||| |||||||||||||||||||||||| ||||| Sbjct 1673323 TTGCTCCACCAAGTAAGAATGACCATGCCCCACCACCCATAGAATCAAGAAAGGGCTATT 1673264 Query 251 AA 252 || Sbjct 1673263 AA 1673262 Score = 102 bits (112), Expect = 1e-19 Identities = 154/213 (72%), Gaps = 16/213 (8%) Strand=Plus/Plus Query 50 GGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCT 109 || ||||| | |||| | |||| ||||||||||| | || | ||||||||||| Sbjct 2138411 GGTCATCATAAACCTATAATTGTCTCAAACTTCCTTAAACTAAGTGGTCATAGTCCCTCT 2138470 Query 110 AAGAAGCCAGCCACCAACCA-TAG--TCG-ATGGGGCTATTTAGCAGGTTAAGGTCTCGT 165 |||||| | ||| || || ||| || ||| |||||||||| | ||||| | Sbjct 2138471 AAGAAGTG-GTCACAAAGGGGTACCTTCGCATAC--CTAGTTAGCAGGTTGAAGTCTCTT 2138527 Query 166 TCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCA 225 | ||||||| ||| ||||||||||||||||| | || | | ||||||||||| Sbjct 2138528 --------GAAATTAACTAGA-AAATCACTCCACCAACTGAAAAAGACAATGCACCACCA 2138578 Query 226 CCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||| |||||||| | | ||| || Sbjct 2138579 CCCATAGAATCAAAAAAGAGCTTTTAGTCTATC 2138611 >seq1 Length=29149675 Score = 78.8 bits (86), Expect = 1e-12 Identities = 88/116 (76%), Gaps = 4/116 (3%) Strand=Plus/Minus Query 3 CTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGAC 62 |||| || | | || || ||| || ||||| | ||||||||||||||| ||||||| || Sbjct 23285965 CTCGTTGAATACATCGGTATAGTGCACGTGCAGTCCAGAACATCTAAGGACATCACATAC 23285906 Query 63 CTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCA--ATAGTCCCTCTAAGAAGC 116 | ||||| ||||||||||| || | |||| | || |||||||||||||| Sbjct 23285905 TTTTTATTACCTCAAACTTC--TTTGACCTAAGCGATCATGTTCCCTCTAAGAAGC 23285852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796798533390