Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq4 408 7e-112 seq5 100 5e-19 >seq4 Length=23425844 Score = 408 bits (452), Expect = 7e-112 Identities = 267/293 (91%), Gaps = 1/293 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| |||| | | | ||||||||||||||||||||||||||||||| Sbjct 10165678 TACTAGGTTGAATTACTATTGTGAC-ATTGTCATCAGTAGGGTAAAACTAACCTGTCTCA 10165736 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| || Sbjct 10165737 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 10165796 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 10165797 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 10165856 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | Sbjct 10165857 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 10165916 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 |||||| ||| || |||||||||||||||||||| |||||| |||| |||||| Sbjct 10165917 CAAATTCCGAAGGTCTAAAGGATCGATAGGCCACGCTTTCACGGTTCGTATTC 10165969 Score = 116 bits (128), Expect = 6e-24 Identities = 76/84 (90%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAG 269 |||||||||||||||||| |||||||||| ||||||| ||| || ||||||||||||||| Sbjct 10159396 CCTGTGGTAACTTTTCTGACACCTCTAGCTTCAAATTCCGAAGGTCTAAAGGATCGATAG 10159455 Query 270 GCCACACTTTCATGGTTTGTATTC 293 ||||| |||||| |||| |||||| Sbjct 10159456 GCCACGCTTTCACGGTTCGTATTC 10159479 >seq5 Length=28023477 Score = 100 bits (110), Expect = 5e-19 Identities = 63/68 (93%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 160 ATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAA 219 |||||||| || || ||||| ||||||| ||||||||||||||||||||||||||||||| Sbjct 12145834 ATCAAAAAACACCGCCGCTAGGAACGCTGGGCTGCCACAAGCCAGTTATCCCTGTGGTAA 12145775 Query 220 CTTTTCTG 227 |||||||| Sbjct 12145774 CTTTTCTG 12145767 Score = 82.4 bits (90), Expect = 1e-13 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGC 238 |||||||||||||||| |||||||||| |||| ||||||||||||||| |||| | | | Sbjct 789474 ATGAACGCTTGGCTGCTGCAAGCCAGTTGTCCCAGTGGTAACTTTTCTGACACCACGAAC 789533 Query 239 CTCAAATT 246 ||||||| Sbjct 789534 TTCAAATT 789541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854398376640