Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq190 235 1e-59 seq187 203 7e-50 seq4 120 7e-25 seq3 91.5 3e-16 >seq190 Length=155293 Score = 235 bits (260), Expect = 1e-59 Identities = 259/337 (77%), Gaps = 21/337 (6%) Strand=Plus/Minus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 || || | ||| || |||||| | | |||||||||||| || ||||||||||||||| Sbjct 102633 TTCACGACCCGTAGGCCTTCTACCTC-CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCA 102576 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 ||| || |||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 102575 TTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 102516 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| |||||||||||||| |||||| ||| |||| |||||||||| ||| ||| |||||| Sbjct 102515 GTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCAC 102456 Query 182 CAACTAGCTAATCCGAC-CTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 ||||||||||||| ||| | || | | || || ||| || ||| ||| Sbjct 102455 CAACTAGCTAATCAGACGCGAGCCCCTCCT-----CG---GGC-----GGATTCCTCCTT 102409 Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA- 299 | | | | | |||| | ||||||||| |||||||| ||| | ||| || ||| Sbjct 102408 TTGCTCCTCAG-CGTACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAA 102352 Query 300 -GGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 ||||| ||| || || ||||||||||||||||| || Sbjct 102351 GGGCAGGTTCTTACGCGTTACTCACCCGTCCGCCACT 102315 Score = 235 bits (260), Expect = 1e-59 Identities = 259/337 (77%), Gaps = 21/337 (6%) Strand=Plus/Plus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 || || | ||| || |||||| | | |||||||||||| || ||||||||||||||| Sbjct 139276 TTCACGACCCGTAGGCCTTCTACCTC-CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCA 139333 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 ||| || |||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 139334 TTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 139393 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| |||||||||||||| |||||| ||| |||| |||||||||| ||| ||| |||||| Sbjct 139394 GTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCAC 139453 Query 182 CAACTAGCTAATCCGAC-CTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 ||||||||||||| ||| | || | | || || ||| || ||| ||| Sbjct 139454 CAACTAGCTAATCAGACGCGAGCCCCTCCT-----CG---GGC-----GGATTCCTCCTT 139500 Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA- 299 | | | | | |||| | ||||||||| |||||||| ||| | ||| || ||| Sbjct 139501 TTGCTCCTCAG-CGTACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAA 139557 Query 300 -GGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 ||||| ||| || || ||||||||||||||||| || Sbjct 139558 GGGCAGGTTCTTACGCGTTACTCACCCGTCCGCCACT 139594 >seq187 Length=1555935 Score = 203 bits (224), Expect = 7e-50 Identities = 179/220 (81%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58 |||||||| | | | | ||||||| ||| |||||| |||| ||||||| ||||||||| Sbjct 167467 CTTTACAAGCGGCATTGCCCTTCTT-CACTCACGCGATATTG-CTGGATCGGGCTTTCGC 167410 Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118 ||||||||||| |||||||||||||||| ||||| |||||| || |||||||||||| || Sbjct 167409 CCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCC 167350 Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178 |||||| |||||||||| ||||||| || | ||| | | |||||| |||| |||||| Sbjct 167349 AGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCT 167290 Query 179 CACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGC 218 |||||| | ||||| | || ||||||||| | ||||| Sbjct 167289 GACCAACGACCTAATACTACGCAGGCTCATCAAACAGCGC 167250 Score = 203 bits (224), Expect = 7e-50 Identities = 179/220 (81%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58 |||||||| | | | | ||||||| ||| |||||| |||| ||||||| ||||||||| Sbjct 918422 CTTTACAAGCGGCATTGCCCTTCTT-CACTCACGCGATATTG-CTGGATCGGGCTTTCGC 918365 Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118 ||||||||||| |||||||||||||||| ||||| |||||| || |||||||||||| || Sbjct 918364 CCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCC 918305 Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178 |||||| |||||||||| ||||||| || | ||| | | |||||| |||| |||||| Sbjct 918304 AGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCT 918245 Query 179 CACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGC 218 |||||| | ||||| | || ||||||||| | ||||| Sbjct 918244 GACCAACGACCTAATACTACGCAGGCTCATCAAACAGCGC 918205 Score = 158 bits (174), Expect = 3e-36 Identities = 225/310 (73%), Gaps = 35/310 (11%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 661422 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 661364 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 || ||||||| || ||||||||| |||||||| ||| |||||| |||||| | Sbjct 661363 CC-----AGTCTGGGCCCTGTCTCAGTCCCAGTGTGGCTG-----CCTCTCGGACCAGCT 661314 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC-CTAGGCTCA 207 || |||| | |||||||| || ||||||||||||||||||| ||| | || | | Sbjct 661313 ACTGATCATTGCCTTGGTAAG-----GCCTCACCAACTAGCTAATCAGACGCGAGCCCCT 661259 Query 208 TCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAG 267 || || ||| || ||| |||| | | | | |||| | |||||||| Sbjct 661258 CCT-----CG---GGC-----GGATTCCTCCTTTTGCTCCTCAG-CGTACGGGGTATTAG 661213 Query 268 CGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACCC 325 | |||||||| ||| | ||| || ||| ||||| ||| || || |||||||||| Sbjct 661212 CAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAAGGGCAGGTTCTTACGCCTTACTCACCC 661155 Query 326 GTCCGCCGCT 335 ||||||| || Sbjct 661154 GTCCGCCACT 661145 >seq4 Length=23425844 Score = 120 bits (132), Expect = 7e-25 Identities = 163/222 (73%), Gaps = 19/222 (9%) Strand=Plus/Minus Query 111 TCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGC 170 ||||| |||||||| |||||||||||||| |||||| ||| |||| |||||||||| ||| Sbjct 22747006 TCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGC 22746947 Query 171 CATTACCTCACCAACTAGCTAATCCGAC-CTAGGCTCATCTGATAGCGCAAGGCCCGAAG 229 ||| ||||||||||||||||||| ||| | || | | || || ||| | Sbjct 22746946 TATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCT-----CG---GGC-----G 22746900 Query 230 GTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCC 289 | ||| |||| | | | | |||| | ||||||||| | |||||| ||| | | Sbjct 22746899 GATTCCTCCTTTTGCTCCTCAG-CGTACGAGGTATTAGCAGCTGTTTCCAGCTGTTGTTC 22746841 Query 290 CCCACTACCA--GGCAGATTCCTAGGCATTACTCACCCGTCC 329 || || ||| ||||| ||| || ||||||||||||||||| Sbjct 22746840 CC--CTCCCAAGGGCAGGTTCTTACGCATTACTCACCCGTCC 22746801 >seq3 Length=39782674 Score = 91.5 bits (100), Expect = 3e-16 Identities = 72/85 (85%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 47 TCAGGCTTTCGCCCATTGTCCAATATTC-CCCACTGCTGCCTCCCGTAGGAGTCTGGACC 105 ||| ||||||||||||| || |||| |||||| ||||||||| ||||||| ||| || Sbjct 8465522 TCATGCTTTCGCCCATTTGAAAAAATTCTCCCACTACTGCCTCCCATAGGAGTTTGGGCC 8465463 Query 106 GTGTCTCAGTTCCAGTGTGACTGAT 130 |||||||||| |||||||| ||||| Sbjct 8465462 GTGTCTCAGTCCCAGTGTGGCTGAT 8465438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071997963200