Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq190 259 2e-66 seq187 149 2e-33 >seq190 Length=155293 Score = 259 bits (286), Expect = 2e-66 Identities = 343/470 (73%), Gaps = 27/470 (6%) Strand=Plus/Minus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | | ||| || |||| |||||| Sbjct 106853 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 106794 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||||| || | | |||||| | ||| ||||||| ||||||| || Sbjct 106793 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 106734 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | |||| |||||| |||| |||||||||||||| | ||||||| | | | | ||| Sbjct 106733 TTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 106674 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG----GTTAA 370 || | |||| || |||||||||||||||||||| || || |||| Sbjct 106673 ACAAT----TGCCCCATGAAGACTCGCTTTCGCTACGGCT---CCGGTGGGTTCCCTTAA 106621 Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429 || || ||| | | | |||| |||||||||||||| |||||||| |||| | Sbjct 106620 CCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA---GAG 106566 Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489 ||| | || |||| || | ||| | || | ||||||| || ||||||||| Sbjct 106565 TCCT--------CGTCTCCTCCCACTGCTTGGAAGCTTACGGTTTCATGTTCTATTTCAC 106514 Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549 |||||| ||||| ||||||||| ||||||||||||||| | | |||||||||||| | Sbjct 106513 TCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCACTATCGGTCACCCA 106454 Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 ||||||||||| ||| |||||||| | |||||||||| ||| || Sbjct 106453 GGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 106404 Score = 257 bits (284), Expect = 6e-66 Identities = 344/471 (73%), Gaps = 28/471 (6%) Strand=Plus/Plus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | | ||| || |||| |||||| Sbjct 135053 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 135112 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||||| || | | |||||| | ||| ||||||| ||||||| || Sbjct 135113 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 135172 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | |||| |||||| |||| |||||||||||||| | ||||||| | | | | ||| Sbjct 135173 TTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 135232 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG----GTTAA 370 || | |||| || |||||||||||||||||||| || || |||| Sbjct 135233 ACAAT----TGCCCCATGAAGACTCGCTTTCGCTACGGCT---CCGGTGGGTTCCCTTAA 135285 Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429 || || ||| | | | |||| |||||||||||||| |||||||| |||| | Sbjct 135286 CCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA---GAG 135340 Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489 ||| | || |||| || | ||| | || | ||||||| || ||||||||| Sbjct 135341 TCCT--------CGTCTCCTCCCACTGCTTGGAAGCTTACGGTTTCATGTTCTATTTCAC 135392 Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549 |||||| ||||| ||||||||| ||||||||||||||| | | |||||||||||| | Sbjct 135393 TCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCACTATCGGTCACCCA 135452 Query 550 GGAGTATTTAGGCTTAACGGGTGGTCC-CGCCAGATTCACACGAAATTTCA 599 ||||||||||| ||| |||||||| | | |||||||||| ||| || Sbjct 135453 GGAGTATTTAGCCTTGCAAGGTGGTCCTTGGCTGATTCACACGGGATTCCA 135503 >seq187 Length=1555935 Score = 149 bits (164), Expect = 2e-33 Identities = 352/522 (67%), Gaps = 46/522 (9%) Strand=Plus/Plus Query 88 GGGCC-CCCTAGACCATCCAGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCACCTA 146 ||||| |||||| |||| ||||||||||||| || | ||| ||||| || | Sbjct 835332 GGGCCACCCTAGCCCATTGAGTGCTCTACCTCGGGCCATCGACATCATACGCTCTACTGA 835391 Query 147 AATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCAC 206 ||| |||||| ||| |||||||||| | | ||| ||||||||||||||||| |||| Sbjct 835392 AATAGATTTCGCGGAAAACCAGCTATATCCGATCTTGGTTGGCCTTTCACCCCTAGCCAC 835451 Query 207 AGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTA-CCCGC 265 | ||||||||| | ||| | || || ||||||||||||||||| | | ||| | | Sbjct 835452 AAGTCATCCCCGTATTTTGCCACATACGTGGGTTCGGTCCTCCAAGGCCTGTTAGAGCTC 835511 Query 266 GCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACG 325 ||||||||||| ||||| |||||| | | |||||||| || | | | | | Sbjct 835512 TCTTCAACCTGCTCATGGCTAGATCGATCGGTTTCGGGTC-AAATAGGAAGAACGAGAAG 835570 Query 326 CCCTATTCGGACTCGCTTTCGCTA-CGGCTACCCCACACGGGTTAACCTCGCGACACAAC 384 |||| || || | | | || |||| || | || |||| || || | Sbjct 835571 ----ATTC-CAC---CTCTGGAAAGCGCCTACACCTAATGGCTTAA----GCCGCAGTTC 835618 Query 385 GCA--AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGT----------CACCT------ 426 || ||||| | | ||| | ||||||| ||||||| | || Sbjct 835619 CCATTTTCTCGCTGACCCATCATGCAAAAGGTACGCCGTTAGAGTGAGATAGCTTTACTA 835678 Query 427 --GGTACCTA----AAAGGCACTTCAGCTCC---GACGGATTGTAGGCACATGGTTTCAG 477 | | ||| |||||| | | ||||| ||| ||||| | ||| | | |||| Sbjct 835679 AGAGAATCTAAAGTAAAGGC-TTGCCGCTCCTTCGACTGATTGAAAGCATCGGATCTCAG 835737 Query 478 GT--ACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCG 535 || ||||| ||||||| |||| |||||||||||||||||||||||||||| || Sbjct 835738 GTTCTCTATTGCACTCCCTAAATAGGGTTCTTTTCACCTTTCCCTCACGGTACTTGTACG 835797 Query 536 CTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCC 577 |||||||||| |||| || ||||||||| |||||||||| Sbjct 835798 CTATCGGTCATTGAGGAATACTTAGGCTTAGAGGGTGGTCCC 835839 Score = 149 bits (164), Expect = 2e-33 Identities = 352/522 (67%), Gaps = 46/522 (9%) Strand=Plus/Plus Query 88 GGGCC-CCCTAGACCATCCAGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCACCTA 146 ||||| |||||| |||| ||||||||||||| || | ||| ||||| || | Sbjct 1063574 GGGCCACCCTAGCCCATTGAGTGCTCTACCTCGGGCCATCGACATCATACGCTCTACTGA 1063633 Query 147 AATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCAC 206 ||| |||||| ||| |||||||||| | | ||| ||||||||||||||||| |||| Sbjct 1063634 AATAGATTTCGCGGAAAACCAGCTATATCCGATCTTGGTTGGCCTTTCACCCCTAGCCAC 1063693 Query 207 AGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTA-CCCGC 265 | ||||||||| | ||| | || || ||||||||||||||||| | | ||| | | Sbjct 1063694 AAGTCATCCCCGTATTTTGCCACATACGTGGGTTCGGTCCTCCAAGGCCTGTTAGAGCTC 1063753 Query 266 GCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACG 325 ||||||||||| ||||| |||||| | | |||||||| || | | | | | Sbjct 1063754 TCTTCAACCTGCTCATGGCTAGATCGATCGGTTTCGGGTC-AAATAGGAAGAACGAGAAG 1063812 Query 326 CCCTATTCGGACTCGCTTTCGCTA-CGGCTACCCCACACGGGTTAACCTCGCGACACAAC 384 |||| || || | | | || |||| || | || |||| || || | Sbjct 1063813 ----ATTC-CAC---CTCTGGAAAGCGCCTACACCTAATGGCTTAA----GCCGCAGTTC 1063860 Query 385 GCA--AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGT----------CACCT------ 426 || ||||| | | ||| | ||||||| ||||||| | || Sbjct 1063861 CCATTTTCTCGCTGACCCATCATGCAAAAGGTACGCCGTTAGAGTGAGATAGCTTTACTA 1063920 Query 427 --GGTACCTA----AAAGGCACTTCAGCTCC---GACGGATTGTAGGCACATGGTTTCAG 477 | | ||| |||||| | | ||||| ||| ||||| | ||| | | |||| Sbjct 1063921 AGAGAATCTAAAGTAAAGGC-TTGCCGCTCCTTCGACTGATTGAAAGCATCGGATCTCAG 1063979 Query 478 GT--ACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCG 535 || ||||| ||||||| |||| |||||||||||||||||||||||||||| || Sbjct 1063980 GTTCTCTATTGCACTCCCTAAATAGGGTTCTTTTCACCTTTCCCTCACGGTACTTGTACG 1064039 Query 536 CTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCC 577 |||||||||| |||| || ||||||||| |||||||||| Sbjct 1064040 CTATCGGTCATTGAGGAATACTTAGGCTTAGAGGGTGGTCCC 1064081 Score = 141 bits (156), Expect = 3e-31 Identities = 203/280 (73%), Gaps = 21/280 (8%) Strand=Plus/Plus Query 325 GCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGGT----TAACCTCGCGACA 380 |||| |||| |||||||||| ||||||||| || || | ||||| || || Sbjct 511681 GCCCCATTCAGACTCGCTTTTGCTACGGCT---CCGGTGGGTTCCCTTAACCAAGC--CA 511735 Query 381 CAACGCAA-ACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGG 439 | | | | |||| |||||||||||||| |||||||| |||| || ||| || Sbjct 511736 CTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGA--GT-CCT----GG 511788 Query 440 CACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCAG 499 || |||| || | ||| | || | ||||||| | ||||||||||||||| | Sbjct 511789 ----TCTCCTCCCACTGCTTGGAAGCTTACGGTTTCATCTTCTATTTCACTCCCCGATGG 511844 Query 500 GGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTA 559 |||| ||||||||| ||||||||||||||| | | |||||||||||| ||||||||||| Sbjct 511845 GGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCACTATCGGTCACCCAGGAGTATTTA 511904 Query 560 GGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 | ||| |||||||| | |||||||||| ||| || Sbjct 511905 GCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 511944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817596546560