Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq190 223 9e-56 seq187 170 5e-40 >seq190 Length=155293 Score = 223 bits (246), Expect = 9e-56 Identities = 308/414 (74%), Gaps = 14/414 (3%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| | Sbjct 106787 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 106731 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || |||| ||| ||||||||| ||| | || |||||| || | || Sbjct 106730 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 106675 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186 ||| | |||| | |||||||||||| ||||||| |||| | ||| |||| | Sbjct 106674 GACAATT-GCCCCATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 106617 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGT 246 ||||||| || |||||| | | |||| | ||| ||| |||| |||| | || Sbjct 106616 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGTCCTC-GT 106559 Query 247 GGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGT 306 ||||||||||||| | || |||||||||| | ||||||||||||||| | ||||| Sbjct 106558 CTCCTCCCACTGCTTGGAAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG-GGGGT 106500 Query 307 TCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCT 366 ||||||| || |||||||||||||||| |||||||||||||| ||| |||||||||||| Sbjct 106499 TCTTTTCACCCTTCCCTCACGGTACTACTTCACTATCGGTCACCCAGGAGTATTTAGCCT 106440 Query 367 TGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 || | | |||||| | ||||| || || | ||||| || | ||||||| Sbjct 106439 TGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 106386 Score = 217 bits (240), Expect = 4e-54 Identities = 282/373 (76%), Gaps = 14/373 (4%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| | Sbjct 135119 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 135175 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || |||| ||| ||||||||| ||| | || |||||| || | || Sbjct 135176 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 135231 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186 ||| | |||| | |||||||||||| ||||||| |||| | ||| |||| | Sbjct 135232 GACAATT-GCCCCATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 135289 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGT 246 ||||||| || |||||| | | |||| | ||| ||| |||| |||| | || Sbjct 135290 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGTCCTC-GT 135347 Query 247 GGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGT 306 ||||||||||||| | || |||||||||| | ||||||||||||||| | ||||| Sbjct 135348 CTCCTCCCACTGCTTGGAAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG-GGGGT 135406 Query 307 TCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCT 366 ||||||| || |||||||||||||||| |||||||||||||| ||| |||||||||||| Sbjct 135407 TCTTTTCACCCTTCCCTCACGGTACTACTTCACTATCGGTCACCCAGGAGTATTTAGCCT 135466 Query 367 TGGAGGATGGTCC 379 || | | |||||| Sbjct 135467 TGCAAGGTGGTCC 135479 >seq187 Length=1555935 Score = 170 bits (188), Expect = 5e-40 Identities = 213/286 (74%), Gaps = 6/286 (2%) Strand=Plus/Plus Query 137 GCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTTTGCCACTG 194 |||| | | |||||||||||| |||||| |||| | ||| |||| | ||||||| Sbjct 511681 GCCCCATTCAGACTCGCTTTT-GCTACGGCTCCGGTGGGTTCCCTTAACCAA-GCCACTG 511738 Query 195 AAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCC 254 || |||||| | | |||| | ||| ||| |||| |||| | || ||||| Sbjct 511739 CCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGTCCTG-GTCTCCTCCC 511797 Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCG 314 |||||||| | || |||||||||| ||||||||||||||| | |||||||||||| Sbjct 511798 ACTGCTTGGAAGCTTACGGTTTCATCTTCTATTTCACTCCCCGATG-GGGGTTCTTTTCA 511856 Query 315 CCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGAT 374 || |||||||||||||||| |||||||||||||| ||| |||||||||||||| | | | Sbjct 511857 CCCTTCCCTCACGGTACTACTTCACTATCGGTCACCCAGGAGTATTTAGCCTTGCAAGGT 511916 Query 375 GGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 ||||| | ||||| || || | ||||| || | ||||||| Sbjct 511917 GGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 511962 Score = 98.7 bits (108), Expect = 2e-18 Identities = 101/130 (78%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCTTTT 312 |||| ||| | |||| | | ||||| ||| ||| ||||||| | |||||||||| Sbjct 835713 ACTGATTGAAAGCATCGGATCTCAGGTTCTCTATTGCACTCCC-TAAATAGGGTTCTTTT 835771 Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372 | |||||||||||||||||| || | |||||||||| | || | || |||| ||| |||| Sbjct 835772 CACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTAGAGG 835831 Query 373 ATGGTCCCCC 382 ||||||||| Sbjct 835832 GTGGTCCCCC 835841 Score = 98.7 bits (108), Expect = 2e-18 Identities = 101/130 (78%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCTTTT 312 |||| ||| | |||| | | ||||| ||| ||| ||||||| | |||||||||| Sbjct 1063955 ACTGATTGAAAGCATCGGATCTCAGGTTCTCTATTGCACTCCC-TAAATAGGGTTCTTTT 1064013 Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372 | |||||||||||||||||| || | |||||||||| | || | || |||| ||| |||| Sbjct 1064014 CACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTAGAGG 1064073 Query 373 ATGGTCCCCC 382 ||||||||| Sbjct 1064074 GTGGTCCCCC 1064083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241597640960