Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq17 75.2 7e-12 seq2 75.2 7e-12 seq1 73.4 2e-11 >seq17 Length=15755 Score = 75.2 bits (82), Expect = 7e-12 Identities = 56/63 (89%), Gaps = 2/63 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| | Sbjct 11108 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 11165 Query 122 GCT 124 ||| Sbjct 11166 GCT 11168 >seq2 Length=23174626 Score = 75.2 bits (82), Expect = 7e-12 Identities = 56/63 (89%), Gaps = 2/63 (3%) Strand=Plus/Minus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| | Sbjct 12482638 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 12482581 Query 122 GCT 124 ||| Sbjct 12482580 GCT 12482578 >seq1 Length=29149675 Score = 73.4 bits (80), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 3/86 (3%) Strand=Plus/Minus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| | |||||| |||||| || |||||| | |||| |||||| ||||| |||| Sbjct 68443 TCCGAACACTTTCACTAGACCATTTAAT-CGGTAGGA-GCGATGGGCGGTGTGTAGAAAG 68386 Query 99 GGCAGGGACGTAATACAACGCAAGCT 124 |||||||||||| | |||| |||||| Sbjct 68385 GGCAGGGACGTAGT-CAACACAAGCT 68361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300799464200