Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq190 215 1e-53 seq187 147 4e-33 seq4 104 5e-20 seq3 84.2 4e-14 >seq190 Length=155293 Score = 215 bits (238), Expect = 1e-53 Identities = 232/305 (76%), Gaps = 18/305 (6%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || ||||||||||||||||||||| Sbjct 102602 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 102543 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||| | || ||||| ||| Sbjct 102542 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 102483 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | ||| |||||| |||||| ||||||||||| |||||| | ||||||||| || | Sbjct 102482 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTCGG 102423 Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239 || ||| || || ||| ||||| | || | ||||||||| Sbjct 102422 GCGGATTCCTCCTT------------TTGC--TCCTC--AGCGTACGGGGTATTAGCAGC 102379 Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299 |||||||| ||| |||| ||| || |||||||| || ||| |||||||||||||||| Sbjct 102378 CGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTCCG 102320 Query 300 CCACT 304 ||||| Sbjct 102319 CCACT 102315 Score = 215 bits (238), Expect = 1e-53 Identities = 232/305 (76%), Gaps = 18/305 (6%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || ||||||||||||||||||||| Sbjct 139307 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 139366 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||| | || ||||| ||| Sbjct 139367 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 139426 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | ||| |||||| |||||| ||||||||||| |||||| | ||||||||| || | Sbjct 139427 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTCGG 139486 Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239 || ||| || || ||| ||||| | || | ||||||||| Sbjct 139487 GCGGATTCCTCCTT------------TTGC--TCCTC--AGCGTACGGGGTATTAGCAGC 139530 Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299 |||||||| ||| |||| ||| || |||||||| || ||| |||||||||||||||| Sbjct 139531 CGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTCCG 139589 Query 300 CCACT 304 ||||| Sbjct 139590 CCACT 139594 >seq187 Length=1555935 Score = 147 bits (162), Expect = 4e-33 Identities = 218/306 (71%), Gaps = 35/306 (11%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || ||||||||||||||||| Sbjct 661417 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCC---- 661362 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 |||||||||| ||||||||||||| |||||| | |||||| | || ||||| ||| Sbjct 661361 -AGTCTGGGCCCTGTCTCAGTCCCAGTGTGGCTG-----CCTCTCGGACCAGCTACTGAT 661308 Query 121 CGTCGGCTTGGT-GGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTC 179 | | | |||||| ||| ||||||||||| |||||| | ||||||||| || | Sbjct 661307 CATTGCCTTGGTAAGGC------CTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTCG 661254 Query 180 AGC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGT 238 || ||| || || ||| ||||| | || | ||||||||| Sbjct 661253 GGCGGATTCCTCCTT------------TTGC--TCCTC--AGCGTACGGGGTATTAGCAG 661210 Query 239 TCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCC 298 |||||||| ||| |||| ||| || |||||||| || ||| |||||||||||||| Sbjct 661209 CCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCCTTACTCACCCGTCC 661151 Query 299 GCCACT 304 |||||| Sbjct 661150 GCCACT 661145 Score = 132 bits (146), Expect = 1e-28 Identities = 121/153 (79%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| ||| || |||| |||||||| ||| || ||||||||||||| ||||| |||||| Sbjct 167427 GCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCC 167368 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||||||||||||||||||| |||||| | ||| || || || |||| ||| | || Sbjct 167367 GGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGG 167308 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAAT 159 |||||| || ||| || |||||| ||||||| Sbjct 167307 CTTGGTCAGCCTTTACCTGACCAACGACCTAAT 167275 Score = 132 bits (146), Expect = 1e-28 Identities = 121/153 (79%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| ||| || |||| |||||||| ||| || ||||||||||||| ||||| |||||| Sbjct 918382 GCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCC 918323 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||||||||||||||||||| |||||| | ||| || || || |||| ||| | || Sbjct 918322 GGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGG 918263 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAAT 159 |||||| || ||| || |||||| ||||||| Sbjct 918262 CTTGGTCAGCCTTTACCTGACCAACGACCTAAT 918230 >seq4 Length=23425844 Score = 104 bits (114), Expect = 5e-20 Identities = 158/223 (71%), Gaps = 18/223 (8%) Strand=Plus/Minus Query 77 TCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGC 136 ||||||||| |||||| | ||| |||||| | || ||||| |||| ||| |||||| || Sbjct 22747006 TCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGC 22746947 Query 137 TATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGC-GATAAATCTTTGG 195 |||| ||||||||||| |||||| | ||||||||| || | || ||| || || Sbjct 22746946 TATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTCGGGCGGATTCCTCCTT-- 22746889 Query 196 TCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTCGTTTCCAAACGTTAT 255 ||| ||||| | || | ||||||||| ||||||| ||| | Sbjct 22746888 ----------TTGC--TCCTC--AGCGTACGAGGTATTAGCAGCTGTTTCCAGCTGTTGT 22746843 Query 256 TCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCC 298 ||| ||| || |||||||| || ||| |||||||||||||| Sbjct 22746842 TCCCCTCCCAAGGGCAGGTT-CTTACGCATTACTCACCCGTCC 22746801 >seq3 Length=39782674 Score = 84.2 bits (92), Expect = 4e-14 Identities = 69/82 (84%), Gaps = 3/82 (4%) Strand=Plus/Minus Query 13 TCAGGGTTTCCCCCATTGTGCAATA--TCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGC 70 ||| | |||| |||||| || || | || |||||| ||||||||| ||||||| ||||| Sbjct 8465522 TCATGCTTTCGCCCATT-TGAAAAAATTCTCCCACTACTGCCTCCCATAGGAGTTTGGGC 8465464 Query 71 CGTGTCTCAGTCCCAATGTGGC 92 ||||||||||||||| |||||| Sbjct 8465463 CGTGTCTCAGTCCCAGTGTGGC 8465442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998398103040