Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq190 217 3e-54 seq187 167 5e-39 seq3 93.3 1e-16 >seq190 Length=155293 Score = 217 bits (240), Expect = 3e-54 Identities = 300/409 (73%), Gaps = 18/409 (4%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | | Sbjct 107403 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 107344 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||| | | |||| | | |||||| |||| | || |||||| ||| Sbjct 107343 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 107284 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177 ||||||| || ||| || ||||| || || | | | ||||| || || | | Sbjct 107283 ACATTCTCGCTTCCGCTTCG--TCCACAACTGC-TCGCGCAGGTGCTTC-CCTCTAAGGC 107228 Query 178 G--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231 | ||||||||||||| | || ||| | ||||||||||||| ||| |||| | Sbjct 107227 GGAACGCTCCCCTACCGATGCATTTTTACA---TCCCACAGCTTCGGCAGATCGCTTA-G 107172 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291 ||||| | ||| ||||||| | | || || ||||||||||||||||||||||||||| Sbjct 107171 CCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAG 107113 Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351 | |||||||||| | || |||||||||| ||||| ||| | | || |||||| ||||| Sbjct 107112 GGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCACTG 107053 Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || || |||||||||||||||| ||||| ||||||||||||||||| Sbjct 107052 AGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 107004 Score = 217 bits (240), Expect = 3e-54 Identities = 300/409 (73%), Gaps = 18/409 (4%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | | Sbjct 134503 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 134562 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||| | | |||| | | |||||| |||| | || |||||| ||| Sbjct 134563 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 134622 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177 ||||||| || ||| || ||||| || || | | | ||||| || || | | Sbjct 134623 ACATTCTCGCTTCCGCTTCG--TCCACAACTGC-TCGCGCAGGTGCTTC-CCTCTAAGGC 134678 Query 178 G--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231 | ||||||||||||| | || ||| | ||||||||||||| ||| |||| | Sbjct 134679 GGAACGCTCCCCTACCGATGCATTTTTACA---TCCCACAGCTTCGGCAGATCGCTTA-G 134734 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291 ||||| | ||| ||||||| | | || || ||||||||||||||||||||||||||| Sbjct 134735 CCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAG 134793 Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351 | |||||||||| | || |||||||||| ||||| ||| | | || |||||| ||||| Sbjct 134794 GGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCACTG 134853 Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || || |||||||||||||||| ||||| ||||||||||||||||| Sbjct 134854 AGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 134902 >seq187 Length=1555935 Score = 167 bits (184), Expect = 5e-39 Identities = 153/192 (80%), Gaps = 6/192 (3%) Strand=Plus/Plus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268 ||||||| | || |||| ||||||| |||||| |||| || ||| || ||||||| Sbjct 835055 GCTTCGGTGAATCACTTGAGCCCCGATACATTTTCGGTGCCATGGAG---CTAGACCAGT 835111 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328 |||||||||||| |||| ||||||||||||||||||||| |||||||||||||| || Sbjct 835112 GAGCTATTACGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGTCATCG 835171 Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388 | || |||||| ||||| ||| | ||||||| ||||||| | |||||||||| Sbjct 835172 CTCGATAACTTCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTACGATCTGGGCT 835231 Query 389 GTTTCCCTCTCG 400 |||||||||||| Sbjct 835232 GTTTCCCTCTCG 835243 Score = 167 bits (184), Expect = 5e-39 Identities = 153/192 (80%), Gaps = 6/192 (3%) Strand=Plus/Plus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268 ||||||| | || |||| ||||||| |||||| |||| || ||| || ||||||| Sbjct 1063297 GCTTCGGTGAATCACTTGAGCCCCGATACATTTTCGGTGCCATGGAG---CTAGACCAGT 1063353 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328 |||||||||||| |||| ||||||||||||||||||||| |||||||||||||| || Sbjct 1063354 GAGCTATTACGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGTCATCG 1063413 Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388 | || |||||| ||||| ||| | ||||||| ||||||| | |||||||||| Sbjct 1063414 CTCGATAACTTCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTACGATCTGGGCT 1063473 Query 389 GTTTCCCTCTCG 400 |||||||||||| Sbjct 1063474 GTTTCCCTCTCG 1063485 Score = 161 bits (178), Expect = 2e-37 Identities = 295/423 (70%), Gaps = 32/423 (8%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | | Sbjct 98943 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 98884 Query 61 CTGGAACCCTTG------GATAATCGGCGGACGGGATTCCCACCCGTCACACGCT-ACTC 113 ||||||| | | |||| | | |||||| |||| || || |||| Sbjct 98883 GAGGAACCCCCACTACGCGGTTTTCGGGGCATTGGATTCTCACCAATCTTTGCCTTACTC 98824 Query 114 ATGCCTGCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCAC 171 | ||| ||||||| || ||| || ||||| || || | | | ||||| || | Sbjct 98823 AAGCCGACATTCTCGCTTCCGCTTCG--TCCACAACTGC-TCGCGCAGGTGCTTC-CCTC 98768 Query 172 TGACACG--ACGCTCCCCTACCCAACCACACAGGTTGCCACAGCTTCGGCGGATAACTTA 229 | | || ||||||||||||| | | ||| | ||||||||||||| ||| |||| Sbjct 98767 TAAGGCGGAACGCTCCCCTACCGATGCTTACA---TCCCACAGCTTCGGCAGATCGCTTA 98711 Query 230 AGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCA 289 |||||| | ||| ||||||| | | || || ||||||||||||||||||||||||| Sbjct 98710 -GCCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCA 98653 Query 290 AGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATC------CTT 343 ||| ||||| |||| | || |||||||||| ||||| ||| | | || || ||| Sbjct 98652 AGGGTGGCTCCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCTT 98593 Query 344 TCCCACTGAGTCACCACTTAGGGG------CCTTAGCTGATGATCTGGGCTGTTTCCCTC 397 | ||||||| || ||||||| ||||||||| ||||| ||||| |||||||| Sbjct 98592 TATCACTGAGCGGTCATTTAGGGGTAGGTTCCTTAGCTGGTGATCCGGGCTCTTTCCCTC 98533 Query 398 TCG 400 ||| Sbjct 98532 TCG 98530 >seq3 Length=39782674 Score = 93.3 bits (102), Expect = 1e-16 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 274 ATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACT 333 || |||||||||||||||| |||||||||| | || |||||||||| ||||| ||| | Sbjct 6161520 ATCACGCACTCTTTCAAGGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCC 6161579 Query 334 CCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATG 379 | || |||||| |||| | || |||||||||||||||| || Sbjct 6161580 CTACCTCCTTTATCACTAAACGGTCATTTAGGGGCCTTAGCTGGTG 6161625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177597762560