Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq17 127 2e-27 seq3 127 2e-27 seq2 116 4e-24 seq4 104 2e-20 >seq17 Length=15755 Score = 127 bits (140), Expect = 2e-27 Identities = 139/181 (77%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 12029 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 11970 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| |||||| | || | ||||||||| || | ||| || ||||||| Sbjct 11969 GGGATAACGTCATAGGATTT-CGATCCTATTTTGTTGGCCTTCGGGATCGGA-GTAATGA 11912 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 11911 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 11852 Query 190 T 190 | Sbjct 11851 T 11851 >seq3 Length=39782674 Score = 127 bits (140), Expect = 2e-27 Identities = 139/181 (77%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 21394081 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 21394022 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| |||||| | || | ||||||||| || | ||| || ||||||| Sbjct 21394021 GGGATAACGTCATAGGATTT-CGATCCTATTTTGTTGGCCTTCGGGATCGGA-GTAATGA 21393964 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 21393963 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 21393904 Query 190 T 190 | Sbjct 21393903 T 21393903 >seq2 Length=23174626 Score = 116 bits (128), Expect = 4e-24 Identities = 137/180 (76%), Gaps = 4/180 (2%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACCATG 70 || |||||||||| ||||||||| | |||||||| |||| ||| | |||||||| |||| Sbjct 12485455 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCT-GTATACATTAGCATG 12485513 Query 71 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGAT 130 | |||| | |||||| || | | ||||| ||| || | ||| | |||||||| Sbjct 12485514 GGATAAC-GCATAGGATGT-CAATCCTATTCTGTTGGCCTTCGGGATCAGA-GTAATGAT 12485570 Query 131 AAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 || | ||| ||||||||| | ||||| || |||| ||||||||||||||||||||| Sbjct 12485571 TAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 12485630 >seq4 Length=23425844 Score = 104 bits (114), Expect = 2e-20 Identities = 134/181 (74%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || ||||||| || ||| ||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 10170203 CTGTTACTTTAAAGAAACTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 10170144 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| |||||| | || | ||||| ||| || | ||| || ||||||| Sbjct 10170143 GGTATAACGTCATAGGATTT-CGATCCTATTCTGTTGGCCTTCGGGATCGGA-GTAATGA 10170086 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| | || | |||||||||||||||||||| Sbjct 10170085 TTAACATGGACAGTCGGGGGCATTCGTATTTCACAGTTAGAGGTGAAATTCTTGGATTTA 10170026 Query 190 T 190 | Sbjct 10170025 T 10170025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511999057600