Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq17 309 6e-82 seq2 309 6e-82 seq4 257 3e-66 seq3 257 3e-66 seq5 140 6e-31 seq1 132 9e-29 >seq17 Length=15755 Score = 309 bits (342), Expect = 6e-82 Identities = 261/317 (82%), Gaps = 14/317 (4%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCC------CGCTTTGGCGGGTCGCCGGCT 73 || |||||||| | |||||||| |||| | || | | | |||| || ||| Sbjct 11447 GAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGGTACCCCTCCGCGG----CCAGCT 11392 Query 74 TCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGA 131 ||||||||||||||| | ||| | ||| | ||||||||||||||||||||||||||||| Sbjct 11391 TCTTAGAGGGACTATGGCCGCTTAGGCCAA-GGAAGTTTGAGGCAATAACAGGTCTGTGA 11333 Query 132 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCAC 191 ||||||||||||||||||||||||||||||||||||||| | |||||||| || | Sbjct 11332 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAGC 11273 Query 192 CTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGC 251 |||||||| ||| | |||||||||| | ||| | ||||| |||||||||| |||||| Sbjct 11272 CTTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTGC 11214 Query 252 AATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTA 311 |||| ||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| || Sbjct 11213 AATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTA 11154 Query 312 CGTCCCTGCCCTTTGTA 328 ||||||||||||||||| Sbjct 11153 CGTCCCTGCCCTTTGTA 11137 >seq2 Length=23174626 Score = 309 bits (342), Expect = 6e-82 Identities = 261/317 (82%), Gaps = 14/317 (4%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCC------CGCTTTGGCGGGTCGCCGGCT 73 || |||||||| | |||||||| |||| | || | | | |||| || ||| Sbjct 12482299 GAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGGTACCCCTCCGCGG----CCAGCT 12482354 Query 74 TCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGA 131 ||||||||||||||| | ||| | ||| | ||||||||||||||||||||||||||||| Sbjct 12482355 TCTTAGAGGGACTATGGCCGCTTAGGCCAA-GGAAGTTTGAGGCAATAACAGGTCTGTGA 12482413 Query 132 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCAC 191 ||||||||||||||||||||||||||||||||||||||| | |||||||| || | Sbjct 12482414 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAGC 12482473 Query 192 CTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGC 251 |||||||| ||| | |||||||||| | ||| | ||||| |||||||||| |||||| Sbjct 12482474 CTTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTGC 12482532 Query 252 AATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTA 311 |||| ||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| || Sbjct 12482533 AATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTA 12482592 Query 312 CGTCCCTGCCCTTTGTA 328 ||||||||||||||||| Sbjct 12482593 CGTCCCTGCCCTTTGTA 12482609 >seq4 Length=23425844 Score = 257 bits (284), Expect = 3e-66 Identities = 214/259 (83%), Gaps = 2/259 (1%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||||||||| | ||| || | | ||||||||||| ||||||||||||| | Sbjct 10169568 GCTTCTTAGAGGGACTATGGCCTCTTAGGCCAAGGAAGTTTGAGCCAATAACAGGTCTTT 10169509 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 |||| |||||||||||||||||||||||||||||||||||| | |||||||| || Sbjct 10169508 GATGTCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATA 10169449 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 |||||| || || | | |||||||| | ||| | ||||| ||||||||| |||| Sbjct 10169448 GCCTTGGTCGACTGGCCCGAGTAATCTT-TGAAATTTCATCGTGATGGGGATAGGTCATT 10169390 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 |||||| ||| ||||||||||||||| ||||||||||||| ||||||||| |||||| Sbjct 10169389 GCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTCCC 10169330 Query 310 TACGTCCCTGCCCTTTGTA 328 ||||||| |||| |||||| Sbjct 10169329 TACGTCCGTGCCTTTTGTA 10169311 >seq3 Length=39782674 Score = 257 bits (284), Expect = 3e-66 Identities = 217/263 (83%), Gaps = 4/263 (2%) Strand=Plus/Minus Query 68 CCGGCTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGT 125 || |||||||||||||||||| | ||| | ||| | ||||||||||||||||||||||| Sbjct 21393449 CCAGCTTCTTAGAGGGACTATGGCCGCTTAGGCCAA-GGAAGTTTGAGGCAATAACAGGT 21393391 Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185 ||||||||||||||||| || |||| |||| ||| |||||||||| | |||||||| Sbjct 21393390 CTGTGATGCCCTTAGATTTTTTGGGTCGCATGCGTGCTACACTGATGTATTCAACGAGTC 21393331 Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245 || ||||||||| ||| | ||||||||| | ||| | ||||| |||||||||| Sbjct 21393330 TATAGCCTTGGCCGACAGGCCCAGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGAT 21393272 Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305 |||||||||| ||| ||||||||||||||| |||||||||| || ||||||||| ||||| Sbjct 21393271 CATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCACGAGTCATCAGCTCGCGT 21393212 Query 306 TGATTACGTCCCTGCCCTTTGTA 328 | | |||||||||| | ||| || Sbjct 21393211 TCACTACGTCCCTGGCATTTTTA 21393189 Score = 82.4 bits (90), Expect = 1e-13 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 209 GGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAAC 268 ||||||||| | ||| | ||||| |||||||||| |||||||||| ||| |||||||| Sbjct 36960880 GGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTGCAATTGTTGATCTTCAAC 36960822 Query 269 GAGGAATGCCTAGTA 283 ||||||| ||||||| Sbjct 36960821 GAGGAATTCCTAGTA 36960807 >seq5 Length=28023477 Score = 140 bits (154), Expect = 6e-31 Identities = 195/266 (73%), Gaps = 8/266 (3%) Strand=Plus/Plus Query 67 GCCGGCTTCTTAGAGGGACTATCG---GCTCAAGCCGATGGAAGTTTGAGGCAATAACAG 123 ||||| ||||||||| ||||| || | | | ||| | |||||||||||||| ||||| Sbjct 1673394 GCCGGTTTCTTAGAGAGACTA-CGATTGTTTAGGCCAA-GGAAGTTTGAGGCACTAACAA 1673451 Query 124 GTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAG 183 |||| ||||||||||||||||| |||||||||| || | | |||| | | |||||| Sbjct 1673452 GTCTATGATGCCCTTAGATGTTATGGGCCGCACACGTGTTGCACTAATGTATTTAACGAG 1673511 Query 184 TTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAG 243 | || |||||| | | || | |||||||| | ||| | || | || |||| Sbjct 1673512 TATATAGCCTTGGTTGACAAGTTCGAGTAATCTT-TGAAATTTCATCCCGATGAAGATA- 1673569 Query 244 AGC-ATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACG 302 ||| |||| |||| ||| |||| || ||||||| || ||||||| || || |||||| | Sbjct 1673570 AGCTATTGTAATTGTTGGTCTTTAATGAGGAATTCCCAGTAAGCACGAGTTATCAGCTCT 1673629 Query 303 CGTTGATTACGTCCCTGCCCTTTGTA 328 | || | ||||| |||| ||| || Sbjct 1673630 CTTTAACTACGTTTCTGCTTTTTATA 1673655 >seq1 Length=29149675 Score = 132 bits (146), Expect = 9e-29 Identities = 188/260 (72%), Gaps = 6/260 (2%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 |||||||||||||| || ||| | | | | | |||||||||| ||||| | || || Sbjct 23285852 GCTTCTTAGAGGGAACATGATCGCTTAGGTCAAAG-AAGTTTGAGGTAATAAAAAGTATG 23285910 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188 ||||| ||||||||||||||| | ||||| || ||| || || | ||||||| || Sbjct 23285911 TGATGTCCTTAGATGTTCTGGACTGCACGTGCACTATACCGATGTATTCAACGAGCCTAT 23285970 Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248 ||||| || || | ||| || | | || | | || |||||||||| ||| Sbjct 23285971 AGTCTTGGTCGATAGACAT--GTAGTCCT-TGAAGTTTCATTCTGATGGGGATAGATCAT 23286027 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 ||||||| ||| |||||||||| | || |||| ||| || | |||||||| ||||| | Sbjct 23286028 TGCAATTGTTGATCTTCAACGAAGCATTCCTAATAAACGTGAATCATCAGCTTGCGTTTA 23286087 Query 309 TTACGTCCCTGCCCTTTGTA 328 |||||| || |||| |||| Sbjct 23286088 CTACGTCTCTCCCCTCTGTA 23286107 Score = 109 bits (120), Expect = 1e-21 Identities = 102/127 (80%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 202 AGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCT 261 ||| | | |||||||| | ||| | ||||| ||| |||| | |||||||||| ||| | Sbjct 68268 AGGCCCGAGTAATCTT-TGAAATTTCATCGTGATGGAGATATATCATTGCAATTGTTGGT 68326 Query 262 CTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCC 321 ||||||||||||| | ||||||||||| | ||||||| | ||||| |||||||||||| Sbjct 68327 -TTCAACGAGGAATTCTTAGTAAGCGCGAGCCATCAGCTTGTGTTGACTACGTCCCTGCC 68385 Query 322 CTTTGTA 328 |||| || Sbjct 68386 CTTTCTA 68392 Score = 98.7 bits (108), Expect = 2e-18 Identities = 100/129 (78%), Gaps = 10/129 (8%) Strand=Plus/Minus Query 203 GGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAG---AGCATTGCAATTATTG 259 |||| | |||||||| | ||| | ||||| |||||| || | |||||||||| ||| Sbjct 68203 GGTCCGAGTAATCTT-TGAAATTTCATCGTGATGGGGACAGGTCATCATTGCAATTGTTG 68145 Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319 |||||||| ||| || ||||||||||||| ||||| ||||||| ||| ||| || Sbjct 68144 GTCTTCAACAAGGTATTCCTAGTAAGCGCGAGTCAT------GCGTTGACTACATCCTTG 68091 Query 320 CCCTTTGTA 328 ||||||||| Sbjct 68090 CCCTTTGTA 68082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947198200320