Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq190 181 4e-43 seq187 181 4e-43 >seq190 Length=155293 Score = 181 bits (200), Expect = 4e-43 Identities = 388/571 (68%), Gaps = 38/571 (7%) Strand=Plus/Plus Query 14 GGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAG 73 |||| | ||| ||| | | |||||||| | |||||||| ||||| ||||||||||| Sbjct 106664 GGGCAATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAG 106723 Query 74 GTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCT 133 | ||| | || |||||||||||||| ||| |||||||| ||| || ||||||| | Sbjct 106724 CTTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTT 106783 Query 134 GTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATT 193 |||| ||||||||||| || | | ||| || |||||||||||| |||||| || Sbjct 106784 GTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCCCCGAAATGCGTT 106843 Query 194 TAGGTAGTGCCTCAAGTATCAC----CATC-GGGGGTAGAGCACTGTTATGGCTAGGG-G 247 ||| || ||| | || |||| |||||| ||||||||| || ||| Sbjct 106844 GAGGCGCAGC----AGT-TGACTGGACATCTAGGGGTAAAGCACTGTTTCGGTGCGGGCC 106898 Query 248 GTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGC--------GCATCAGTTTTAC 299 | | ||| ||||||| | |||||||| |||| | ||| | || Sbjct 106899 GCGAGAGCG--GTACCAAATCGAGGCAAACTCTGAATACTAGATATGATCTCAAAATAAC 106956 Query 300 CGCGG-----------GAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGA 348 | || |||||| ||||| | |||| | | | ||||||| || | Sbjct 106957 AGGGGTCAAGGTCGGCCAGTGAGACGATGGGGGATAAGCTTCATCGTCGAGAGGGAAACA 107016 Query 349 ATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATT 408 ||||| | ||||||||||||| ||||||| ||| ||| | | || || || | | Sbjct 107017 GCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATA--AAGGAGGTAGGGGT 107074 Query 409 GCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGC 468 || ||||||| |||| ||| || | |||||||||| | || ||||||||||||| ||| Sbjct 107075 GCAGAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCA-CCCTTGAAAGAGTGCGTAATAGC 107133 Query 469 TCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAG 528 ||||| ||||| || ||| || || | |||| |||| ||| ||||||| | Sbjct 107134 TCACTGATCGAGCGCTCTTGCGCCGAAGATGAACGGG-GCTAAGCGATCTGCCGAAGCTG 107192 Query 529 TGGGATCATTTATATG-ATCGGTAGGGGAGC 558 |||||| | | ||| |||||||||||||| Sbjct 107193 TGGGAT-GTAAAAATGCATCGGTAGGGGAGC 107222 Score = 181 bits (200), Expect = 4e-43 Identities = 388/571 (68%), Gaps = 38/571 (7%) Strand=Plus/Minus Query 14 GGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAG 73 |||| | ||| ||| | | |||||||| | |||||||| ||||| ||||||||||| Sbjct 135242 GGGCAATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAG 135183 Query 74 GTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCT 133 | ||| | || |||||||||||||| ||| |||||||| ||| || ||||||| | Sbjct 135182 CTTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTT 135123 Query 134 GTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATT 193 |||| ||||||||||| || | | ||| || |||||||||||| |||||| || Sbjct 135122 GTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCCCCGAAATGCGTT 135063 Query 194 TAGGTAGTGCCTCAAGTATCAC----CATC-GGGGGTAGAGCACTGTTATGGCTAGGG-G 247 ||| || ||| | || |||| |||||| ||||||||| || ||| Sbjct 135062 GAGGCGCAGC----AGT-TGACTGGACATCTAGGGGTAAAGCACTGTTTCGGTGCGGGCC 135008 Query 248 GTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGC--------GCATCAGTTTTAC 299 | | ||| ||||||| | |||||||| |||| | ||| | || Sbjct 135007 GCGAGAGCG--GTACCAAATCGAGGCAAACTCTGAATACTAGATATGATCTCAAAATAAC 134950 Query 300 CGCGG-----------GAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGA 348 | || |||||| ||||| | |||| | | | ||||||| || | Sbjct 134949 AGGGGTCAAGGTCGGCCAGTGAGACGATGGGGGATAAGCTTCATCGTCGAGAGGGAAACA 134890 Query 349 ATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATT 408 ||||| | ||||||||||||| ||||||| ||| ||| | | || || || | | Sbjct 134889 GCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATA--AAGGAGGTAGGGGT 134832 Query 409 GCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGC 468 || ||||||| |||| ||| || | |||||||||| | || ||||||||||||| ||| Sbjct 134831 GCAGAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCA-CCCTTGAAAGAGTGCGTAATAGC 134773 Query 469 TCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAG 528 ||||| ||||| || ||| || || | |||| |||| ||| ||||||| | Sbjct 134772 TCACTGATCGAGCGCTCTTGCGCCGAAGATGAACGGG-GCTAAGCGATCTGCCGAAGCTG 134714 Query 529 TGGGATCATTTATATG-ATCGGTAGGGGAGC 558 |||||| | | ||| |||||||||||||| Sbjct 134713 TGGGAT-GTAAAAATGCATCGGTAGGGGAGC 134684 >seq187 Length=1555935 Score = 181 bits (200), Expect = 4e-43 Identities = 320/459 (70%), Gaps = 22/459 (5%) Strand=Plus/Minus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAG-GTGCGGTAACACGCCCTGGA 93 ||||||||||| | |||||| ||||| |||| ||||| | || ||||| ||| |||| Sbjct 835551 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 835492 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 || |||||||||| |||| | ||||| |||||||| ||||| |||||||||||||| Sbjct 835491 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 835432 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATC 213 || ||| | ||| |||||||||| || ||||| |||||| |||| || | | || Sbjct 835431 AACCAAGATCGGATATAGCTGGTTTTCCGCGAAATCTATTTCAGTAGAGCGT--ATGATG 835374 Query 214 ACCAT---CGGGGGTAGAGCACTGTTATGGCTAGGGGG---TCATTGCGACTTACCAAAC 267 | || | | ||||||||||| |||||||| | |||| || |||||||| | Sbjct 835373 TCGATGGCCCGAGGTAGAGCACTCAATGGGCTAGGGTGGCCCCATTTCGCCTTACCAACC 835314 Query 268 CATTGCAAACTCCGAATGC--GC----ATCAGTTTTACCGCGGGAGTGAGGGCATGGGTG 321 | | ||||||||||| | || ||| || ||| | || | | ||||| Sbjct 835313 CCAGGGAAACTCCGAATACAGGCCTAGATCGTTTGTACAGACAGACTTTTG----GGGTG 835258 Query 322 CTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACA 381 ||||| ||| ||||||| || | || || | ||||||| ||| || | Sbjct 835257 CTAAGATCCAAAGTCGAGAGGGAAACAGCCCAGATCGTACGCTAAGGTCCCTAAGCAATC 835198 Query 382 GCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAG 441 || ||| || || ||||| || | |||| | |||| || ||||||||||||| Sbjct 835197 ACTTAGTGGAA--AAGGAAGTTATCGAGCGATGACAACCAGGAGGTGGGCTTGGAAGCAG 835140 Query 442 CCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480 ||| || ||| |||| |||||| |||||||| ||| || Sbjct 835139 CCA-TCCTTTGAAGAAAGCGTAATAGCTCACTGGTCTAG 835102 Score = 181 bits (200), Expect = 4e-43 Identities = 320/459 (70%), Gaps = 22/459 (5%) Strand=Plus/Minus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAG-GTGCGGTAACACGCCCTGGA 93 ||||||||||| | |||||| ||||| |||| ||||| | || ||||| ||| |||| Sbjct 1063793 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 1063734 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 || |||||||||| |||| | ||||| |||||||| ||||| |||||||||||||| Sbjct 1063733 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 1063674 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATC 213 || ||| | ||| |||||||||| || ||||| |||||| |||| || | | || Sbjct 1063673 AACCAAGATCGGATATAGCTGGTTTTCCGCGAAATCTATTTCAGTAGAGCGT--ATGATG 1063616 Query 214 ACCAT---CGGGGGTAGAGCACTGTTATGGCTAGGGGG---TCATTGCGACTTACCAAAC 267 | || | | ||||||||||| |||||||| | |||| || |||||||| | Sbjct 1063615 TCGATGGCCCGAGGTAGAGCACTCAATGGGCTAGGGTGGCCCCATTTCGCCTTACCAACC 1063556 Query 268 CATTGCAAACTCCGAATGC--GC----ATCAGTTTTACCGCGGGAGTGAGGGCATGGGTG 321 | | ||||||||||| | || ||| || ||| | || | | ||||| Sbjct 1063555 CCAGGGAAACTCCGAATACAGGCCTAGATCGTTTGTACAGACAGACTTTTG----GGGTG 1063500 Query 322 CTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACA 381 ||||| ||| ||||||| || | || || | ||||||| ||| || | Sbjct 1063499 CTAAGATCCAAAGTCGAGAGGGAAACAGCCCAGATCGTACGCTAAGGTCCCTAAGCAATC 1063440 Query 382 GCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAG 441 || ||| || || ||||| || | |||| | |||| || ||||||||||||| Sbjct 1063439 ACTTAGTGGAA--AAGGAAGTTATCGAGCGATGACAACCAGGAGGTGGGCTTGGAAGCAG 1063382 Query 442 CCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480 ||| || ||| |||| |||||| |||||||| ||| || Sbjct 1063381 CCA-TCCTTTGAAGAAAGCGTAATAGCTCACTGGTCTAG 1063344 Score = 96.9 bits (106), Expect = 1e-17 Identities = 183/263 (70%), Gaps = 16/263 (6%) Strand=Plus/Plus Query 306 AGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTA 365 |||||| ||||| | |||| | | | ||||||| |||| ||||| | |||||| Sbjct 98500 AGTGAGACGATGGGGGATAAGCTTCATCGTCGAGAGGGAAAGAGCCCGGATCACCAGCTA 98559 Query 366 AGG------CCCCGAAATGACAGCTAAGT--TAAACT--AACGAAGTCTGATTGCTAAGA 415 ||| |||| ||||||| ||| ||| |||| || || || | ||| ||| Sbjct 98560 AGGAACCTACCCCTAAATGACCGCTCAGTGATAAAGATAAAGGAGGTAGGGGTGCAGAGA 98619 Query 416 CAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAG 475 |||| |||| ||| || | |||| ||||| | || ||||||||||||| |||||||| Sbjct 98620 CAGCCAGGAGGTTTGCCTAGAAGGAGCCACCC-TTGAAAGAGTGCGTAATAGCTCACTGA 98678 Query 476 TCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTGGGATC 535 ||||| || ||| || || | |||| |||| ||| ||||||| ||||| Sbjct 98679 TCGAGCGCTCTTGCGCCGAAGATGAACGGG-GCTAAGCGATCTGCCGAAGCTGTGGG--- 98734 Query 536 ATTTATATGATCGGTAGGGGAGC 558 || || | |||||||||||||| Sbjct 98735 ATGTA-AGCATCGGTAGGGGAGC 98756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689596789760