Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq4 594 2e-167 seq5 172 2e-40 seq3 96.9 1e-17 seq187 78.8 3e-12 >seq4 Length=23425844 Score = 594 bits (658), Expect = 2e-167 Identities = 456/533 (86%), Gaps = 8/533 (2%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 10166003 CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 10166062 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||| ||||||| |||||||||||| |||||||| || ||||||| Sbjct 10166063 TTTTAACAGATGTGCCACCCCAGCATAACTCCCCACCTAACAATGTCTTCTGTCCGGATC 10166122 Query 127 GGCCCGC-GAAGGA--CCTTAACGCCAGAAA-ATGGTCGGTGAAGACCAGTTCCGCTTCA 182 || ||| |||| | ||||| ||| ||| | || | ||| || ||||| |||| Sbjct 10166123 AGCTCGCAGAAGCAAGCCTTATGTCCAAAAAGAGGGGCAGTGCC--CCGCTTCCGTTTCA 10166180 Query 183 TTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCA 242 || ||||||||| |||| ||| ||||||||||||||||| |||| || |||| | Sbjct 10166181 CGGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTTCGCCTTT-CGACTCCTA 10166239 Query 243 CTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGT 302 ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 10166240 CTTATCCCACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGT 10166299 Query 303 CTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTA 362 ||||||| | ||||||||| ||||| || |||||| ||| ||||||||| | ||||||| Sbjct 10166300 CTTCTTTTCTCGCTGATTCTACCAAGGCCATTCCCTAGGCCGTGGTTTCGTTGGATAGTA 10166359 Query 363 GATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGG 422 || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 10166360 GACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCATCACTAATTAGATGACGAGG 10166419 Query 423 CATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAAT 482 |||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||| Sbjct 10166420 CATTTGGCTACCTTAAACGAGTCATACCTACTCCC-ACGTTTACCCGCGCTTGGTTGAAT 10166478 Query 483 TTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 ||||||||||||||||||||||||||||||||||||||||||| || | |||| Sbjct 10166479 TTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTTAGCATC 10166531 Score = 569 bits (630), Expect = 7e-160 Identities = 465/565 (82%), Gaps = 40/565 (7%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 10159513 CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 10159572 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| || ||||||| Sbjct 10159573 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGTCCGGATC 10159632 Query 127 GGCCCGC---------------------------GAAGGA--CCTTAACGCCAGAAA-AT 156 |||| || |||| | ||||| ||| ||| | Sbjct 10159633 GGCCTGCATGTCTTCCGCCCGGATCGGCCCCGCCGAAGCAAGCCTTATGTCCAAAAAGAG 10159692 Query 157 GGTCGGTGAAGACCAGTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTA 216 || | ||| || ||||| |||| || ||||||||| |||| ||| ||||||||| Sbjct 10159693 GGGCAGTGCC--CCGCTTCCGTTTCACGGAATAAGTAAAATAACGTTAAAAGTAGTGGTA 10159750 Query 217 TTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGT 276 |||||||| |||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct 10159751 TTTCACTTTCGCCTTT-CGGCTCCCACTTATCCTACACCTCTCAAGTCATTTCACAAAGT 10159809 Query 277 CGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCC 336 |||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||| Sbjct 10159810 CGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGTTAGTTC-GCCAAGCCCGTTCT 10159868 Query 337 CTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCA 396 ||| ||||| |||||||| ||||||||||||||||| || |||||||||||||||||||| Sbjct 10159869 CTTTGCTGTAGTTTCGCTGGATAGTAGATAGGGACAATGAGAATCTCGTTAATCCATTCA 10159928 Query 397 TGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCC 456 ||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||| ||| Sbjct 10159929 TGCGCGTGACTAATTAGATGACGAGGCATTTGGCTACCTGAAGAGAGTCATACTTAATCC 10159988 Query 457 CGCCGTTTACCCGCGCTTGGTTGAA--TTTCTTCACTTTGACATTCAGAGCACTGGGCA- 513 |||||||||||||||||||||||| ||| |||||||| ||||||||||||||||| | Sbjct 10159989 TGCCGTTTACCCGCGCTTGGTTGAATTTTTTTTCACTTTCACATTCAGAGCACTGGGAAG 10160048 Query 514 ---GAAATCACATTGCGTCAACATC 535 ||||||||||||||| | |||| Sbjct 10160049 AAGGAAATCACATTGCGTTAGCATC 10160073 Score = 120 bits (132), Expect = 1e-24 Identities = 68/69 (99%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 419 GAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTT 478 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 10173554 GAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACTCGCGCTTGGTT 10173613 Query 479 GAATTTCTT 487 ||||||||| Sbjct 10173614 GAATTTCTT 10173622 Score = 102 bits (112), Expect = 3e-19 Identities = 130/174 (75%), Gaps = 14/174 (8%) Strand=Plus/Plus Query 174 TCCGCTTC-ATTGATTAAGTaaaaaaaC---GATAAGGGTAGTGGTATTTCACTTGCGCC 229 || ||||| || |||||||||||| | | || || ||||||||||| ||| | | Sbjct 4658486 TCTGCTTCCATAGATTAAGTAAAATAGCATGGAAAA---TAGTGGTATTTTACTCTCTTC 4658542 Query 230 GAAACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCA 289 | || ||||| ||| |||||||||| ||||||||| | ||| || |||||| ||| Sbjct 4658543 TTT-CAGCACCCACGTATCCTACACCTCTTAAGTCATTTAAAAAACTCAGACTAG--TCA 4658599 Query 290 AGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCT 343 ||||||| |||||||||| || || | || |||||||| || |||||||| Sbjct 4658600 AGCTCAATAGGGTCTTCTATC----CTCACTCTACCAAGCCCATTTCCTTGGCT 4658649 Score = 80.6 bits (88), Expect = 9e-13 Identities = 56/64 (88%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 374 TGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTAC 433 |||||||||||||||||||||||||||||||||||||||||| | | |||| | ||| Sbjct 17124939 TGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATTTCTATAAATTTTGTTAC 17124880 Query 434 CTTA 437 |||| Sbjct 17124879 CTTA 17124876 >seq5 Length=28023477 Score = 172 bits (190), Expect = 2e-40 Identities = 128/147 (87%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 325 CAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCG 384 ||||| | |||| | ||||||||||| | | ||||||||| ||||||| ||||| |||| Sbjct 789177 CAAGCTCATTCCAT-GGCTGTGGTTTTGATGGATAGTAGAGAGGGACAATGGGA-TCTCA 789234 Query 385 TTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGT 444 ||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||| Sbjct 789235 TTAATCCATTCATACGCGTCACTAATTAGATGAAGAGGCATTTGCCTACCTTAAGAGAGT 789294 Query 445 CATAGTTACTCCCGCCGTTTACCCGCG 471 ||||||||||| | ||||| ||| || Sbjct 789295 CATAGTTACTCATGTCGTTTTCCCACG 789321 Score = 84.2 bits (92), Expect = 7e-14 Identities = 51/54 (94%), Gaps = 0/54 (0%) Strand=Plus/Minus Query 368 GGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 421 |||||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 10660356 GGACAGTGGGAATCTCGTTAATCCATTCATGCATGTTACTAATTAGATGACGAG 10660303 Score = 77.0 bits (84), Expect = 1e-11 Identities = 48/52 (92%), Gaps = 0/52 (0%) Strand=Plus/Minus Query 387 AATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAA 438 ||||||||||||| ||||||||||||||||| |||||||||||||| |||| Sbjct 10660302 AATCCATTCATGCATGTCACTAATTAGATGACAAGGCATTTGGCTACTTTAA 10660251 Score = 75.2 bits (82), Expect = 4e-11 Identities = 53/61 (87%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 410 TTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCG 469 |||||||| |||||||||||||||||||||| ||| | |||||| |||||||||||| Sbjct 4032229 TTAGATGAACAGGCATTTGGCTACCTTAAGAGGGTCGTGATTACTCTTGCCGTTTACCCG 4032288 Query 470 C 470 | Sbjct 4032289 C 4032289 >seq3 Length=39782674 Score = 96.9 bits (106), Expect = 1e-17 Identities = 58/61 (95%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 265 ATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGC 324 || |||||||||||||||||||||||||||||||||||||||||||||| ||||||| || Sbjct 21280566 ATCTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCACTGATTCTGC 21280507 Query 325 C 325 | Sbjct 21280506 C 21280506 >seq187 Length=1555935 Score = 78.8 bits (86), Expect = 3e-12 Identities = 81/106 (76%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 369 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTG 428 ||||| ||| |||||| |||||| ||| ||| ||| ||| ||| ||| |||| Sbjct 833908 GACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTC 833967 Query 429 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 ||||||||| || ||| | ||||||| |||||||||||| | |||| Sbjct 833968 GCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTT 834013 Score = 78.8 bits (86), Expect = 3e-12 Identities = 81/106 (76%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 369 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTG 428 ||||| ||| |||||| |||||| ||| ||| ||| ||| ||| ||| |||| Sbjct 1062150 GACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTC 1062209 Query 429 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 ||||||||| || ||| | ||||||| |||||||||||| | |||| Sbjct 1062210 GCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTT 1062255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635196893120