Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq190 194 6e-47 seq187 188 2e-45 seq1 89.7 2e-15 >seq190 Length=155293 Score = 194 bits (214), Expect = 6e-47 Identities = 391/569 (69%), Gaps = 21/569 (4%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| || |||| |||||||||||||||| ||| || ||||| | || || Sbjct 108389 TCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCC 108330 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 | | | |||| |||||||| |||||||||||| |||||||||| | || |||||| Sbjct 108329 GTCTGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTAC-GCCCCAT 108271 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCC---AGATCATGGGCCAAGGTTAGATATC 177 ||||| | ||| | |||||||| || || || || |||||||||| || Sbjct 108270 AGAAACTGTCTACCTGAGACTGTCCCTTGGCCCGTAGGTCCTGACACAAGGTTAGAATTC 108211 Query 178 CACTACGGTCAGAGTGGTATTTCAACAACGACTCCA--CAACCACTAGCGTGGCCGCATC 235 | | ||||||||||| ||| | | ||| | || | | | |||| || Sbjct 108210 TAGCTCTTCCAGAGTGGTATCTCACTGATGGCTCGGGCCCCCCCCGAAGGGGGCCT--TC 108153 Query 236 ATAGTCTCCCACCTATCCTACACA--AACCGCACCGAATGCCAATACCAAGCTATAGTGA 293 | | || ||||||| || | || || || | || |||||| ||| | | ||||| Sbjct 108152 TTCGCCTTCCACCTAAGCTGCGCAGGAAAGGCCC--AAAGCCAATCCCAGGGAACAGTGA 108095 Query 294 AGGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAAT 352 || | | |||||||| |||| | || | | ||||||| || | | || Sbjct 108094 AGCTTCATAGGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTAT 108035 Query 353 TTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGGA 411 ||||||| |||| | ||||||| | || |||||||||| ||||||| ||||||| Sbjct 108034 TTCACCGAGCCTCTCTCCGAGACAGT-GCCCAGATCGTTACGCCTTTCGTGCGGGTCGGA 107976 Query 412 ACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACT 471 ||||||||||||||||||||||||||||||||| ||||||||||| |||||||| || Sbjct 107975 ACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACC 107916 Query 472 GGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTC 531 |||||||| | ||| ||| || || | | |||| | ||| |||||| Sbjct 107915 GGGGCTTC-GGTCGCCGGCTC-----CCCTGTCATCAGGTCACCAACTTCCTTGACCTTC 107862 Query 532 CAGCACCGGGCAGGCGTCAGTCCGTATAC 560 | |||| ||||||||||||| || |||| Sbjct 107861 CGGCACTGGGCAGGCGTCAGCCCCCATAC 107833 Score = 194 bits (214), Expect = 6e-47 Identities = 391/569 (69%), Gaps = 21/569 (4%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| || |||| |||||||||||||||| ||| || ||||| | || || Sbjct 133517 TCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCC 133576 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 | | | |||| |||||||| |||||||||||| |||||||||| | || |||||| Sbjct 133577 GTCTGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTAC-GCCCCAT 133635 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCC---AGATCATGGGCCAAGGTTAGATATC 177 ||||| | ||| | |||||||| || || || || |||||||||| || Sbjct 133636 AGAAACTGTCTACCTGAGACTGTCCCTTGGCCCGTAGGTCCTGACACAAGGTTAGAATTC 133695 Query 178 CACTACGGTCAGAGTGGTATTTCAACAACGACTCCA--CAACCACTAGCGTGGCCGCATC 235 | | ||||||||||| ||| | | ||| | || | | | |||| || Sbjct 133696 TAGCTCTTCCAGAGTGGTATCTCACTGATGGCTCGGGCCCCCCCCGAAGGGGGCCT--TC 133753 Query 236 ATAGTCTCCCACCTATCCTACACA--AACCGCACCGAATGCCAATACCAAGCTATAGTGA 293 | | || ||||||| || | || || || | || |||||| ||| | | ||||| Sbjct 133754 TTCGCCTTCCACCTAAGCTGCGCAGGAAAGGCCC--AAAGCCAATCCCAGGGAACAGTGA 133811 Query 294 AGGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAAT 352 || | | |||||||| |||| | || | | ||||||| || | | || Sbjct 133812 AGCTTCATAGGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTAT 133871 Query 353 TTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGGA 411 ||||||| |||| | ||||||| | || |||||||||| ||||||| ||||||| Sbjct 133872 TTCACCGAGCCTCTCTCCGAGACAGT-GCCCAGATCGTTACGCCTTTCGTGCGGGTCGGA 133930 Query 412 ACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACT 471 ||||||||||||||||||||||||||||||||| ||||||||||| |||||||| || Sbjct 133931 ACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACC 133990 Query 472 GGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTC 531 |||||||| | ||| ||| || || | | |||| | ||| |||||| Sbjct 133991 GGGGCTTC-GGTCGCCGGCTC-----CCCTGTCATCAGGTCACCAACTTCCTTGACCTTC 134044 Query 532 CAGCACCGGGCAGGCGTCAGTCCGTATAC 560 | |||| ||||||||||||| || |||| Sbjct 134045 CGGCACTGGGCAGGCGTCAGCCCCCATAC 134073 >seq187 Length=1555935 Score = 188 bits (208), Expect = 2e-45 Identities = 189/244 (77%), Gaps = 1/244 (0%) Strand=Plus/Plus Query 241 CTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC- 299 ||||||||||||||||||| | | || || | | |||||||||||||||| | Sbjct 833775 CTCCCACCTATCCTACACATTCGATCAAGGTTGTCACTGCGAAGCTATAGTGAAGGTGCA 833834 Query 300 CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCG 359 ||||||||| |||| |||| | | ||||||| || | | ||||||||||| Sbjct 833835 CGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCG 833894 Query 360 GGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 419 || | || |||||||| ||| ||||||||| |||||||||||||||| ||||| | Sbjct 833895 GGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGC 833954 Query 420 GACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 ||||||||||||||||||||||||| |||| |||||| ||||||||||| |||||||| Sbjct 833955 GACAAGGAATTTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTC 834014 Query 480 AATT 483 ||| Sbjct 834015 CATT 834018 Score = 188 bits (208), Expect = 2e-45 Identities = 189/244 (77%), Gaps = 1/244 (0%) Strand=Plus/Plus Query 241 CTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC- 299 ||||||||||||||||||| | | || || | | |||||||||||||||| | Sbjct 1062017 CTCCCACCTATCCTACACATTCGATCAAGGTTGTCACTGCGAAGCTATAGTGAAGGTGCA 1062076 Query 300 CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCG 359 ||||||||| |||| |||| | | ||||||| || | | ||||||||||| Sbjct 1062077 CGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCG 1062136 Query 360 GGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 419 || | || |||||||| ||| ||||||||| |||||||||||||||| ||||| | Sbjct 1062137 GGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGC 1062196 Query 420 GACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 ||||||||||||||||||||||||| |||| |||||| ||||||||||| |||||||| Sbjct 1062197 GACAAGGAATTTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTC 1062256 Query 480 AATT 483 ||| Sbjct 1062257 CATT 1062260 Score = 154 bits (170), Expect = 5e-35 Identities = 380/566 (67%), Gaps = 29/566 (5%) Strand=Plus/Minus Query 12 GTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCCAACCAGGCTGA 71 |||| |||||||||||||||| ||| || ||||| | || || | | | || Sbjct 461209 GTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCCGTCTGGCCCGA 461150 Query 72 GGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCC 131 || |||||||| |||||||||||| |||||||||| | || |||||| ||||| | Sbjct 461149 GGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTAC-GCCCCATAGAAACTGTCT 461091 Query 132 ACCAGGCACTGTCCCCAACCC---AGATCATGGGCCAAGGTTAGATATCCACTACGGTCA 188 ||| | |||||||| || || || || |||||||||| || | | | | Sbjct 461090 ACCTGAGACTGTCCCTTGGCCCGTAGGTCCTGACACAAGGTTAGAATTCTAGCTCTGGAA 461031 Query 189 GAGTGGTATTTCAACAACGACTC----CACAACCACTAGCGTGGCCGCATCATAGTCTCC 244 ||||||||| ||| | | ||| | | || | | | |||| || | | || | Sbjct 461030 GAGTGGTATCTCACTGATGGCTCGGGCCCCCCCCCCGAAGGGGGCCT--TCTTCGCCTTC 460973 Query 245 CACCTATCCTACACA--AACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCCCG- 301 |||||| || | || || || | || |||||| ||| | | ||||||| | Sbjct 460972 CACCTAAGCTGCGCAGGAAAGGCCC--AAAGCCAATCCCAGGGAAGAGTGAAGCTGAATA 460915 Query 302 GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGG 361 |||||||| |||| | || | | |||||| || | | ||||||||| | Sbjct 460914 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCCCATCTTCACAGACATGTCTATTTCACCGAG 460855 Query 362 CCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCG 420 ||| | ||||||| | || || ||||||| ||||||| |||||||||||||||| Sbjct 460854 CCTCTCTCCGAGACAGT-GCCCAGATCCTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 460796 Query 421 ACAAGGAATTTCGCTACC------TTAGGATGGTTATAGTTACCACCGCCGTTTACTGGG 474 ||||||||||| |||||| | ||| ||||||||||| |||||||| || ||| Sbjct 460795 ACAAGGAATTTAGCTACCGCTCCGTGGGGACCGTTATAGTTACGGCCGCCGTTCACCGGG 460736 Query 475 GCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAG 534 ||||| | ||| ||| || || | | |||| | |||| ||||||| | Sbjct 460735 GCTTC-GGTCGCCGGCTC-----CCCTGTCATCAGGTCACCAACTTTCTTGACCTTCCGG 460682 Query 535 CACCGGGCAGGCGTCAGTCCGTATAC 560 ||| ||||||||||||| || |||| Sbjct 460681 CACTGGGCAGGCGTCAGCCCCCATAC 460656 >seq1 Length=29149675 Score = 89.7 bits (98), Expect = 2e-15 Identities = 76/94 (81%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 || ||||||| ||| |||| || | |||||| |||||||||||||| | || |||| ||| Sbjct 16356699 TCATTACGCCTTTCATGCATGTTGAAACTTATCCGACAAGGAATTTTGTTATCTTAAGAT 16356758 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 ||||||||||| || | | |||| || |||||| Sbjct 16356759 TGTTATAGTTACGACTGTCATTTATTGAGGCTTC 16356792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702396765440