Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq3 241 1e-58 >seq3 Length=39782674 Score = 241 bits (266), Expect = 1e-58 Identities = 589/877 (67%), Gaps = 22/877 (3%) Strand=Plus/Plus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 |||||||||| | ||| | || ||| |||||||| ||||| ||||| ||||||| Sbjct 22912838 TGTTCCCCATTCAATATCCCCAAATCTGGGAGATGTACAAGAAGGCCGAAGCCTCCTTCT 22912897 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCG 61183 |||| | || ||||||||| | || |||||| | ||||| ||| | || Sbjct 22912898 GGACCGCCGAAGAGGTCGATCTCTCTCAAGACACTCGCCATTGGGATTCCTTAACTTCCG 22912957 Query 61184 GTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCA 61243 || | |||||||| | || || | || ||||| || || || || ||||||||| Sbjct 22912958 ACGAGAAGCATTTCATCACTCACGTCCTTGCCTTCTTCGCTGCCTCTGATGGTATCGTCT 22913017 Query 61244 ATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCT 61303 ||||| | | || ||| | |||| || ||||| | || | | |||| Sbjct 22913018 TGGAGAACCTTGCCGGTCGGTTCATGAAGGAAGTTCAAGTCGCTGAAGTCAGAGCCTTCT 22913077 Query 61304 ACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATA 61363 |||| ||||| ||||| || ||||| | || || |||||||| ||| ||||| |||| | Sbjct 22913078 ACGGTTTCCAAATTGCTATCGAGAACATTCATTCCGAGATGTATAGTCTTCTCCTCGAAA 22913137 Query 61364 CGTACATCAGGGAG-CGGGCG-GAACGTGAA-CGATTGTTCAATGCCATCGAGACGATAC 61420 | ||||||| || || | ||| ||| || ||||| |||| || || || | | Sbjct 22913138 CTTACATCAAAGATTCGAATGAGAA---GAATCGCTTGTTTCATGCTATTGATACTGTCC 22913194 Query 61421 CGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACAT 61480 | || ||| ||| || |||||||| || || ||||| ||| || || ||| Sbjct 22913195 CCTGTGTCAAGAAGAAGGCCGATTGGGCGTTGAAGTGGATTGACAGCAC---GGAGTCAT 22913251 Query 61481 TTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTG 61540 ||| ||| || | |||||||||| || ||||| | || ||| || | |||| Sbjct 22913252 TTGCTGAGCGGATTTTGGCATTTGCTTGTGTTGAGGGAATTTTCTTCTCAGG-TAGTTT- 22913309 Query 61541 CCG--CAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGA 61598 | | | || || |||||||| |||||||| | ||||| || || || ||| || || Sbjct 22913310 CTGTTCTATTTTCTGGTTGAAAAAACGTGGGTTAATGCCTGGACTAACATTCTCAAACGA 22913369 Query 61599 GTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC-TGTTT-TGCTATTCAAACGC 61656 |||||| ||| | || || || | |||||||||||||| ||||| | |||| || Sbjct 22913370 GTTGATTTCAAGAGATGAAGGTCTTCATTGTGATTTTGCATGTTTGTTGTATT----CGT 22913425 Query 61657 TATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACT 61716 | | || ||| | | ||| || ||| ||||||||| ||||| || | | Sbjct 22913426 TGT-TGAGGAAGAAATTGAATGTGGATCGAGTGAAGGAGATTGTTATGGAGGCTGTGAAT 22913484 Query 61717 ATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGA 61776 || || |||||| | ||| |||||||| || | || | || |||||| | | Sbjct 22913485 ATAGAGAGGGAATTCGTTTGTGATGCTTTGCCGGTGGCTCTAGTTGGAATGAATGGAGAC 22913544 Query 61777 CTAATGTCGCAGTATATTGAATTTGTTGCCGACCG-TCTGTTGGTCGATTTGGGTATGAA 61835 || ||| || || ||||||||||| || || | | ||||| ||| ||||||| | Sbjct 22913545 CTTATGAGCCAATACATTGAATTTGTGGCAGATAGATTGGTTGGAGCATTGGGGTATG-A 22913603 Query 61836 GCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAA 61895 ||||| ||| | |||| |||||||||| ||||| ||||||| || | || || Sbjct 22913604 CAAAATCTACAATGTGCAAAATCCATTTGATTGGATGGAGTTGATTTCCTTGCAAGGGAA 22913663 Query 61896 GACGAATTTTTTCGAGAAACGTGTAGGCGACTATCAA 61932 ||| ||||| || |||||| | || || || |||||| Sbjct 22913664 GACTAATTTCTTTGAGAAAAGAGTTGGGGAATATCAA 22913700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567079381600