Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq190 625 3e-174 seq1 150 2e-31 seq7 84.2 2e-11 >seq190 Length=155293 Score = 625 bits (692), Expect = 3e-174 Identities = 722/967 (75%), Gaps = 4/967 (0%) Strand=Plus/Minus Query 159830 AACCGCCTCTATGTCGGTTGGTTCGGCGTCCTGATGATCCCAACTCTGTTGGCAGCAACT 159889 ||||| || || | || ||||| || || |||||||||| || | ||| | |||||| Sbjct 1217 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 1158 Query 159890 ATCTGC-TTCATCGTCGCCTTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGA 159948 |||| || || | |||||||| |||||||| || ||||| || ||||| || ||||| Sbjct 1157 -TCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTGGATATTGATGGTATTCGTGA 1099 Query 159949 ACCCGTCGCTGGTTCACTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTC 160008 ||| || |||| || || | ||||| ||||| || || |||||||| || | || | Sbjct 1098 ACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATTTCTGGTGCTATTATCCCTAC 1039 Query 160009 TTCCAACGCAATTGGTCTTCACTTCTATCCCATTTGGGAAGCCGCATCGCTCGACGAGTG 160068 || || || ||| | ||||| || || ||||||||||| || || | || || || Sbjct 1038 CTCTGCAGCTATCGGTTTGCACTTTTACCCAATTTGGGAAGCTGCTTCCGTTGATGAATG 979 Query 160069 GCTCTATAACGGTGGTCCTTTCCAACTCGTAGTCTTCCACTTCCTGATCGGCATCT-ATG 160127 | | || ||||||||||||| | || | || | |||||| | | || | ||| Sbjct 978 GTTATACAACGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCATG 919 Query 160128 CCTATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTG 160187 || |||||||| ||||||||||| || |||||| ||||||||||| ||||| || Sbjct 918 T-TACATGGGTCGAGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTG 860 Query 160188 TTGCATACTCTGCTCCAGTCGCTGCTGCTTCTGCTGTATTCCTCGTCTACCCCTTCGGTC 160247 ||||||| || ||||| || || || ||| ||||||| ||| | | ||||| | |||| Sbjct 859 TTGCATATTCAGCTCCTGTTGCAGCAGCTACTGCTGTTTTCTTGATTTACCCAATTGGTC 800 Query 160248 AGGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTTG 160307 | || || || || | ||||||||| || |||||||||||||| |||| ||| ||| Sbjct 799 AAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTG 740 Query 160308 TATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGGG 160367 ||||||| || || ||||| ||||||||||| || ||||||||| | ||||| ||||| | Sbjct 739 TATTCCAGGCTGAGCACAACATCCTTATGCACCCATTCCACATGTTAGGTGTAGCTGGTG 680 Query 160368 TATTCGGTGGATCTCTGTTCTCTGCTATGCATGGATCTCTGGTTACTTCTAGTCTCGTCA 160427 ||||||| || || || ||| |||||||||||| || |||| ||||||| | ||| Sbjct 679 TATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAAGTTGATCA 620 Query 160428 GAGAGACGACAGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAGGAAGAGA 160487 | || || ||||||| ||| || || | ||||||| ||||||||||||||||| | Sbjct 619 GGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAA 560 Query 160488 CTTACAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCT 160547 |||| || ||||| || || ||||| || || || || ||||||||||||||||| | Sbjct 559 CTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTT 500 Query 160548 TTAACAACTCACGCTCTCTGCACTTCTTCCTCGCTGCTTGGCCTGTTGTTGGAATCTGGT 160607 | |||||||| || ||| | || |||||||| |||||||||||||| || || ||||||| Sbjct 499 TCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGT 440 Query 160608 TCACTGCCCTTGGTGTTTCTACCATGGCATTCAATCTCAATGGTTTCAACTTCAACCAGT 160667 ||| || | ||| || || ||||| ||||| | ||||||||||| |||||||| | Sbjct 439 CCACCGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAAT 380 Query 160668 CCATCTTGGACAACCAAGGACAAGTTCTGAACACTTGGGCAGACGTGCTTAACCGCGCTG 160727 | | | || | ||||| | || | || || ||||| || | ||||||| ||| Sbjct 379 CTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTA 320 Query 160728 GTCTGGGCATGGAAGTCATGCACGAGCGTAACGCTCACAACTTCCCTCTCGACCTTGCTG 160787 ||| || |||||||| ||||| || ||||| ||||||||||||||||| ||||| |||| Sbjct 319 ATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTG 260 Query 160788 CTGCTGA 160794 ||| ||| Sbjct 259 CTGTTGA 253 Score = 551 bits (610), Expect = 6e-152 Identities = 724/994 (73%), Gaps = 7/994 (1%) Strand=Plus/Plus Query 161545 GATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCT 161604 || |||||||||||||| || ||||| || || | || ||||| ||| ||| |||| Sbjct 34893 GACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTTCCTTGTGCCTATTTTGCC 34952 Query 161605 ATTGGCGGTTGGCTTACTGGCACGACTTTCGCTACGAGCTGGTATACCCATGGACTCGCT 161664 | || |||||| |||| || || || || | || ||||||||||||||| | || Sbjct 34953 GTCGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATACCCATGGATTGGCA 35012 Query 161665 AGTTCCTATCTTGAGGG-TGCAAATTTTCTTACAGCGGCAGTTAGCACTCCAGCTGACGC 161723 ||||||||| | || || ||||| || | | || || |||||| ||||| ||| | Sbjct 35013 AGTTCCTATTTGGAAGGATGCAACTTCT-TAACCGCCGCAGTTTCGACTCCTGCTAATAG 35071 Query 161724 TATGGGTCATTCTCTTCTTCTT-CTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGT 161782 | | | || ||| || || || || ||||| ||||| || ||||| ||||| | | Sbjct 35072 TTTAGCCCACTCT-TTGTTGTTACTATGGGGCCCTGAAGCACAAGGAGATTTTACTCGTT 35130 Query 161783 GGATCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGGGCTTTCGCTCTGATTG 161842 || ||| | || || || |||| |||||| || |||||||| ||||||| || || | Sbjct 35131 GGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGACTAATAG 35190 Query 161843 GATTCATGCTTCGTCAGTTTGAACTTGCTCG-TCTTATCGGTATCCGTCCTTACAATGCT 161901 | |||||| | ||||| |||||||||||||| ||| || | | || ||||| ||||| Sbjct 35191 GTTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-TGCGACCTTATAATGCA 35249 Query 161902 ATTGCTTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTTCTCATATATCCTCTGGGA 161961 || || ||||| || || |||||||||||||| || || || || ||||| || || Sbjct 35250 ATCGCATTCTCGGGCCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTAGGT 35309 Query 161962 CAGTCGTCCTGGTTCTTCGCGCCATCGTTTGGGGTTGCCGCTATTTTCAGGTTCTTACTT 162021 ||||| |||||||| ||||| ||||| || || ||||| || | ||| | || Sbjct 35310 CAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATCCTA 35369 Query 162022 TTCCTACAAGGTTTCCACAATTGGACGCTTAATCCGTTCCACATGATGGGTGTCGCAGGT 162081 || | ||||| || || |||||||| | || || || || |||||||| || || || Sbjct 35370 TTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTTGCGGGG 35429 Query 162082 ATCTTGGGTGGTGCTTTGCTCTCTGCTATTCACGGTGTGACTGTTGAAAACACGCTCTAC 162141 | ||||| | |||| |||| | |||||||| |||| || || ||||| || | | Sbjct 35430 GTATTGGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACCTTATTT 35489 Query 162142 CAAGATGGTGAACAAGCAAATACTTTCAAGGCTTTTGACTCTACGCAAGAGGAGGAGACT 162201 | ||||| || |||||||| ||| |||||| || | || |||| || || ||| Sbjct 35490 GAGGATGGGGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACT 35549 Query 162202 TACTCGATGGTTACTGCGAACCGTTTCTGGTCACAGATCTTCGGTATTGCTTTTAGTAAT 162261 || || ||||| ||||| ||||| || ||||| || ||||| || |||||||| ||| Sbjct 35550 TATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAAT 35609 Query 162262 AAGCGTTGGTTGCATTTCTTTATGCTCTTCGTTCCCGTCATGGGTCTCTGGACAAGTTCT 162321 || |||||||| |||||||||||| | || || || || | ||| | |||| ||| || Sbjct 35610 AAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCT 35669 Query 162322 ATCGGTATTATTGGACTCGCTCTTAATCTTCGTGCTTACGACTTTGTATCTCAGGAGATT 162381 | || | |||| || || || || || ||||| || ||||| || |||||||| || Sbjct 35670 CTTGGAGTAGTTGGTCTGGCCCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATC 35729 Query 162382 CGTGCAGCGGAGGATCCTGAATTTGAAACCTTCTACACCAAGAATATCCTCTTGAATGAA 162441 ||||||||||| ||||| |||||||| || ||||| ||||| ||||| ||||| || ||| Sbjct 35730 CGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACCAAAAATATTCTCTTAAACGAA 35789 Query 162442 GGTCTTCGTGCATGGTTGGCACCAGTTGATCAACCGCATGAGAACTTTGTATTCCCTGAG 162501 ||| ||||||| ||| |||| | ||||| || ||||| ||| || ||||||||||| Sbjct 35790 GGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAG 35849 Query 162502 GAAGTTCTGCCTAGAGGTAACGCACTGTGAATGG 162535 || ||||| || | || ||||| || | ||||| Sbjct 35850 GAGGTTCTACCCCGTGGAAACGCTCT-TTAATGG 35882 >seq1 Length=29149675 Score = 150 bits (166), Expect = 2e-31 Identities = 160/211 (76%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 160580 GCTGCTTGGCCTGTTGTTGGAATCTGGTTCACTGCCCTTGGTGTTTCTACCATGGCATTC 160639 |||||||||||||| || || ||||||||||| || | ||| || | ||||| ||| Sbjct 9383827 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACCGCTTTGGGTATTAGCCCTATGGCTTTC 9383886 Query 160640 AATCTCAATGGTTTCAACTTCAACCAGTCCATCTTGGACAACCAAGGACAAGTTCTGAAC 160699 || | ||||||||||| |||||||| || | | || | ||||| | || | || Sbjct 9383887 AACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAAT 9383946 Query 160700 ACTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGCATGGAAGTCATGCACGAGCGTAAC 160759 || ||||| || | ||||||| ||| ||| || |||||||| ||||| || ||||| Sbjct 9383947 ACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAAT 9384006 Query 160760 GCTCACAACTTCCCTCTCGACCTTGCTGCTG 160790 ||||||||||||||||| ||||| ||||||| Sbjct 9384007 GCTCACAACTTCCCTCTAGACCTAGCTGCTG 9384037 >seq7 Length=19226500 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 160697 AACACTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGCATGGAAGTCATGCACGAGCGT 160756 || || ||||| || | ||||||| ||| ||| || |||||||| ||||| || ||| Sbjct 19048888 AATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGT 19048947 Query 160757 AACGCTCACAACTTCCCTCTCGACCTTGCTG 160787 || ||||||||||||||||| ||||| |||| Sbjct 19048948 AATGCTCACAACTTCCCTCTAGACCTAGCTG 19048978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551374690482000