Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq190 623 1e-173 seq1 183 4e-41 seq7 93.3 5e-14 >seq190 Length=155293 Score = 623 bits (690), Expect = 1e-173 Identities = 740/992 (75%), Gaps = 12/992 (1%) Strand=Plus/Minus Query 188851 TTCTGCGAATGGGTCACCTCTACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 188910 ||||| | ||| | ||| ||| | |||||||| || | || ||||| ||||| || Sbjct 1244 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1185 Query 188911 ATGATCCCTACGCTTCTCG-CTGCAACCATCTGC-TTCATCGTCGCCTTTGTCGCTGCAC 188968 ||||||||||| ||| | | | ||||| |||| || || | ||||| | ||||| | Sbjct 1184 ATGATCCCTAC-CTTATTGACCGCAACT-TCTGTATTTATTATTGCCTTCATTGCTGCTC 1127 Query 188969 CCCCTGTAGACATTGATGGCATCCGCGAACCCGTCGCTGGTTCACTCATGTATGGAAACA 189028 | || || || |||||||| || || ||||| || |||| || || | || ||||||| Sbjct 1126 CTCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACA 1067 Query 189029 ACATCATCTCTGGTGCTGTTGTCCCTTCATCCAACGCAATTGGTCTTCACTTCTACCCCA 189088 | || || ||||||||| || ||||| | || || || ||| | ||||| ||||| | Sbjct 1066 ATATTATTTCTGGTGCTATTATCCCTACCTCTGCAGCTATCGGTTTGCACTTTTACCCAA 1007 Query 189089 TCTGGGAAGCCGCCTCACTCGATGAGTGGCTCTACAACGGTGGTCCTTTCCAACTGGTAG 189148 | |||||||| || || | ||||| ||| | |||||||||||||||| | || | | Sbjct 1006 TTTGGGAAGCTGCTTCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAGCTAATTG 947 Query 189149 TCTTCCACTTCCTCATCGGCATCTACGCCT---ACATGGGTCGTGAGTGGGAACTCTCTT 189205 | | |||||| | | || | || || | |||||||||| ||||||||||| || Sbjct 946 TTCTACACTTCTTACTTGG--TGTA-GCATGTTACATGGGTCGAGAGTGGGAACTTAGTT 890 Query 189206 ACCGTCTCGGTATGCGTCCTTGGATCTGCA-TTGCTTACTCTGCACCTGTTGCAGCAGCA 189264 |||||| ||||||||||||||||| ||| |||| || || || |||||||||||||| Sbjct 889 TCCGTCTGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCT 831 Query 189265 TCCGCAGTCTTTCTGGTCTATCCTTTTGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTG 189324 | || || || || | || || |||||||||| || ||||||| ||||| | Sbjct 830 ACTGCTGTTTTCTTGATTTACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTA 771 Query 189325 GGTATCAGTGGAACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATG 189384 || ||| ||| || ||||||| |||| |||| ||||| || |||||||||||||| ||| Sbjct 770 GGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATG 711 Query 189385 CACCCCTTCCACATGCTGGGAGTCGCAGGTGTCTTCGGTGGTTCACTGTTCTCCGCAATG 189444 ||||| ||||||||| | || || || ||||| ||||| || || || ||| || ||| Sbjct 710 CACCCATTCCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATG 651 Query 189445 CATGGTTCACTCGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACCGAGTCCCAGAAC 189504 |||||||| | || || ||| || | | |||||||| |||| || || || Sbjct 650 CATGGTTCCTTGGTAACTTCTAAGTTGATCAGGGAAACCACAGAAAATGAATCTGCTAAT 591 Query 189505 TATGGTTACAAGTTTGGACAAGAAGAAGAAACGTACAACATCGTTGCTGCTCATGGATAT 189564 | ||||||| || || ||||| |||||||| || || ||||| ||||||||||| ||| Sbjct 590 GAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTAT 531 Query 189565 TTCGGTCGTCTTATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTTCACTTCTTC 189624 || || || | |||||||||||||| ||||||||||| ||||| | || |||||| Sbjct 530 TTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTC 471 Query 189625 CTCGCTGCCTGGCCAGTCGTGGGTATCTGGTTTACCGCCCTCGGCGTCAGCACCATGGCA 189684 || ||||| ||||| || || |||||||||| ||||| | || | ||||| ||||| Sbjct 470 CTAGCTGCTTGGCCTGTAGTAGGTATCTGGTCCACCGCTTTAGGTATTAGCACTATGGCT 411 Query 189685 TTCAACCTCAATGGGTTCAACTTCAATCAATCCATTCTTGATGGTCAAGGTCGTGTTCTG 189744 |||||| | ||||| ||||| ||||| ||||| | ||||| ||||||||||||| | Sbjct 410 TTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATT 351 Query 189745 AACACATGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCATGAGCGT 189804 || || ||||| || || | ||||||||| ||||||||||||||| |||||||| ||| Sbjct 350 AATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGT 291 Query 189805 AACGCTCACAACTTCCCTCTTGATCTGGCAGC 189836 || ||||||||||||||||| || || || || Sbjct 290 AATGCTCACAACTTCCCTCTAGACCTAGCTGC 259 Score = 482 bits (534), Expect = 3e-131 Identities = 712/1003 (71%), Gaps = 4/1003 (0%) Strand=Plus/Plus Query 189999 GATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGATTACTTCTTTTT 190058 ||||||||| | | || || || || ||||| |||||||| || || | || ||| Sbjct 34875 GATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTT 34934 Query 190059 CCCACTGCTTATCTCGCAATTGGTGGCTGGCTTACTGGCACGACGTTTGCTACAAGCTGG 190118 || ||| ||| | || | || || ||| |||| || || || |||| || ||| Sbjct 34935 CCTTGTGCCTATTTTGCCGTCGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCATGG 34994 Query 190119 TACACCCACGGACTCGCAAGTAGTTACCTTGAGGG-TGCTAATTTTCTTACAGCGGCTGT 190177 || ||||| ||| | |||||| || | || || ||| | || | | || || || || Sbjct 34995 TATACCCATGGATTGGCAAGTTCCTATTTGGAAGGATGCAACTTCT-TAACCGCCGCAGT 35053 Query 190178 GTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAATCTCA 190237 || || |||||| || | | | || ||| | | |||| ||||| |||||| | || Sbjct 35054 TTCGACTCCTGCTAATAGTTTAGCCCACTCTTTGTTGTTACTATGGGGCCCTGAAGCACA 35113 Query 190238 AGGCGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGG 190297 ||| ||||| | ||| ||| | || || || ||| ||||||| || |||||||| Sbjct 35114 AGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCACGG 35173 Query 190298 GGCTTTCGCTCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGGTA 190356 ||||||| ||||| || |||||| | ||||| |||||||| || || ||| || | Sbjct 35174 TGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT- 35232 Query 190357 TCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTC 190416 | || ||||| ||||| || || ||||| || || || |||||||||||| || || | Sbjct 35233 TGCGACCTTATAATGCAATCGCATTCTCGGGCCCAATTGCTGTTTTTGTTTCTGTATTCC 35292 Query 190417 TCATCTACCCTCTGGGTCAATCGAGTTGGTTCTTCGCGCCATCCTTCGGTGTGGCAGCGA 190476 | || || || || ||||| || |||||||||| ||||| || ||||| ||||| | Sbjct 35293 TGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGCTA 35352 Query 190477 TCTTCCGCTTCCTCCTCTTCTTGCAGGGCTTCCATAACTGGACGCTGAACCCCTTCCACA 190536 | || || ||| |||| || || || || || ||||| ||||| ||||||| || || | Sbjct 35353 TATTTCGATTCATCCTATTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATA 35412 Query 190537 TGATGGGTGTTGCAGGTATCCTGGGAGGAGCACTACTGTCAGCAATCCATGGTGTGACTG 190596 ||||||| ||||| || | |||| | || || || | || || ||||||| || | Sbjct 35413 TGATGGGAGTTGCGGGGGTATTGGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACCG 35472 Query 190597 TAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACGTTTAAAGCATTCGACTCTA 190656 |||| ||||| || | ||| ||||| || ||||| || || || || || | | Sbjct 35473 TAGAAAATACCTTATTTGAGGATGGGGATGGTGCAAATACATTCCGTGCTTTTAACCCAA 35532 Query 190657 CACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGTTTCTGGTCTCAAATCTTTG 190716 | |||| ||||| || ||||| ||||||||||| ||||| || ||||| |||||||||| Sbjct 35533 CTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTG 35592 Query 190717 GTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGTTCCTGTTATGG 190776 | ||||| || ||||| | ||||| |||||||||||| | ||||| || || | | Sbjct 35593 GGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTG 35652 Query 190777 GTCTGTGGACTTCTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACT 190836 || | |||| | | | || | ||||||| || || ||||| ||||| ||||||| Sbjct 35653 GTTTATGGATGAGTGCTCTTGGAGTAGTTGGTCTGGCCCTGAACCTACGTGCCTATGACT 35712 Query 190837 TTGTATCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTCGAGACTTTTTACACAAAAA 190896 | || || || || ||| | ||||| |||||||| || || |||||||| || || |||| Sbjct 35713 TCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACCAAAA 35772 Query 190897 ATATACTTTTGAATGAAGGTCTTCGTTCATGGTTGGCACCTGTTGATCAACCCCATGAGA 190956 |||| || || || |||||| ||||| | ||| |||| || ||||| || ||||| | Sbjct 35773 ATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAA 35832 Query 190957 ATTTTGTATTTCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 190999 | || |||| || || || || | || | || |||||||| Sbjct 35833 ACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 35875 >seq1 Length=29149675 Score = 183 bits (202), Expect = 4e-41 Identities = 166/209 (79%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 189628 GCTGCCTGGCCAGTCGTGGGTATCTGGTTTACCGCCCTCGGCGTCAGCACCATGGCATTC 189687 ||||| ||||| || || ||||||||||| ||||| | || | ||| | ||||| ||| Sbjct 9383827 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACCGCTTTGGGTATTAGCCCTATGGCTTTC 9383886 Query 189688 AACCTCAATGGGTTCAACTTCAATCAATCCATTCTTGATGGTCAAGGTCGTGTTCTGAAC 189747 ||| | ||||| ||||| ||||| ||||| | ||||| ||||||||||||| | || Sbjct 9383887 AACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAAT 9383946 Query 189748 ACATGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCATGAGCGTAAC 189807 || ||||| || || | ||||||||| ||||||||||||||| |||||||| ||||| Sbjct 9383947 ACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAAT 9384006 Query 189808 GCTCACAACTTCCCTCTTGATCTGGCAGC 189836 ||||||||||||||||| || || || || Sbjct 9384007 GCTCACAACTTCCCTCTAGACCTAGCTGC 9384035 >seq7 Length=19226500 Score = 93.3 bits (102), Expect = 5e-14 Identities = 74/89 (83%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 189745 AACACATGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCATGAGCGT 189804 || || ||||| || || | ||||||||| ||||||||||||||| |||||||| ||| Sbjct 19048888 AATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGT 19048947 Query 189805 AACGCTCACAACTTCCCTCTTGATCTGGC 189833 || ||||||||||||||||| || || || Sbjct 19048948 AATGCTCACAACTTCCCTCTAGACCTAGC 19048976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634078494060000