Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cucumis_20sativus_20[refseq_20GCF_5F000004075.2_202014-10-27] 190 sequences; 195,669,205 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq190 702 0.0 seq1 165 9e-36 seq3 127 2e-24 seq7 105 7e-18 >seq190 Length=155293 Score = 702 bits (778), Expect = 0.0 Identities = 739/967 (76%), Gaps = 4/967 (0%) Strand=Plus/Minus Query 160599 AATCGTCTTTACGTCGGTTGGTTCGGTGTGCTGATGATCCCAACTCTGTTGGCAGCAACC 160658 || ||||||||| | || ||||| ||||| |||||||||| || | ||| | ||||| Sbjct 1217 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 1158 Query 160659 GTCTGC-TTTATTACTGCGTTCGTTGCTGCTCCCCCCGTGGACATCGACGGTATCCGTGA 160717 |||| ||||||| ||| ||| |||||||||| || ||||| || || ||||| ||||| Sbjct 1157 -TCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTGGATATTGATGGTATTCGTGA 1099 Query 160718 ACCCGTTGCTGGTTCACTGATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTTC 160777 ||| ||| |||| || || | || |||||||| || || |||||||| || | ||| | Sbjct 1098 ACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATTTCTGGTGCTATTATCCCTAC 1039 Query 160778 TTCCAACGCAATTGGTCTTCACTTCTACCCCATTTGGGAAGCTGCATCTCTTGATGAATG 160837 || || || ||| | ||||| ||||| |||||||||||||| || |||||||||| Sbjct 1038 CTCTGCAGCTATCGGTTTGCACTTTTACCCAATTTGGGAAGCTGCTTCCGTTGATGAATG 979 Query 160838 GCTCTACAATGGTGGTCCTTACCAACTGGTCGTATTTCACTTCCTGATCGGCATCTTCTG 160897 | | ||||| ||||||||||| | || | || | |||||| | | || | || Sbjct 978 GTTATACAACGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCATG 919 Query 160898 CTACATGGGTCGCGAGTGGGAACTTTCCTACCGCCTCGGCATGCGCCCCTGGATCTGC-G 160956 ||||||||||| |||||||||||| | ||| || || ||||| || ||||| ||| | Sbjct 918 TTACATGGGTCGAGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGAT-TGCTG 860 Query 160957 TTGCATATTCTGCACCTGTTGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTC 161016 |||||||||| || |||||||| || || | ||| || ||| | | || || | |||| Sbjct 859 TTGCATATTCAGCTCCTGTTGCAGCAGCTACTGCTGTTTTCTTGATTTACCCAATTGGTC 800 Query 161017 AAGGTTCTTTCTCTGATGGTATGCCCCTGGGTATCTCTGGTACCTTCAACTTCATGCTTG 161076 |||| || ||||| |||||||| || || ||||||||||| |||||||||||| ||| Sbjct 799 AAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTG 740 Query 161077 TCTTCCAGGCAGAACACAACATCCTGATGCACCCCTTCCACATGTTGGGTGTTGCTGGTG 161136 | |||||||| || ||||||||||| |||||||| ||||||||||| ||||| ||||||| Sbjct 739 TATTCCAGGCTGAGCACAACATCCTTATGCACCCATTCCACATGTTAGGTGTAGCTGGTG 680 Query 161137 TCTTCGGTGGTTCTCTGTTCTCCGCAATGCATGGTTCACTGGTTACTTCTTCCCTGGTTC 161196 | ||||| || || || ||| || ||||||||||| |||| |||||| || | Sbjct 679 TATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAAGTTGATCA 620 Query 161197 GTGAAACCACTGAGAACGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGA 161256 | |||||||| || || || || || | ||||||| || |||||||| ||||| | Sbjct 619 GGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAA 560 Query 161257 CCTACAACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCT 161316 | || || ||||| |||||||||||||| || || || ||||||||||||| ||| | Sbjct 559 CTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTT 500 Query 161317 TCAACAACTCCCGTTCGTTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGT 161376 |||||||||| ||||| || || |||||||| || || |||||||| || |||||||||| Sbjct 499 TCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGT 440 Query 161377 TCACTGCACTTGGTGTCTCCACCATGGCATTCAACCTGAACGGATTCAACTTCAACCAGT 161436 ||| || | ||| | ||| ||||| |||||| | || || ||||| |||||||| | Sbjct 439 CCACCGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAAT 380 Query 161437 CCATCATGGATGGTCAGGGCAAAGTCCTGAACACCTGGGCTGACGTTCTGAATCGTGCTA 161496 | | | ||| |||| || || | || ||||||||||| || | || ||||||| Sbjct 379 CTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTA 320 Query 161497 ACCTTGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTGGATCTCGCTG 161556 | |||||||||||||| ||||| || ||||||||||||||||||||||| || || |||| Sbjct 319 ATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTG 260 Query 161557 CTGCTGA 161563 ||| ||| Sbjct 259 CTGTTGA 253 Score = 533 bits (590), Expect = 2e-146 Identities = 733/1021 (72%), Gaps = 8/1021 (1%) Strand=Plus/Plus Query 163887 TTCGATGTCCTGGACGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGA 163946 |||||| | |||| |||||| | | || || || || ||||| |||||||| || Sbjct 34863 TTCGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 34922 Query 163947 TTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGTACAACGTTT 164006 || | || ||||| ||| ||| |||| | || || ||| |||| |||||||| ||| Sbjct 34923 CTATTGCTCTTTCCTTGTGCCTATTTTGCCGTCGGAGGTTGGTTTACAGGTACAACCTTT 34982 Query 164007 GTTACCAGTTGGTACACCCACGGTCTCGCGTCTAGTTACC--TTG--AGGGTGCTAATTT 164062 || || ||||| ||||| || | || |||| | ||| ||| ||| || || Sbjct 34983 GTAACTTCATGGTATACCCATGGATTGGCA---AGTTCCTATTTGGAAGGATGC-AACTT 35038 Query 164063 CCTTACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTG 164122 | | || || || || || || |||||| || | | | || ||| | | |||| || Sbjct 35039 CTTAACCGCCGCAGTTTCGACTCCTGCTAATAGTTTAGCCCACTCTTTGTTGTTACTATG 35098 Query 164123 GGGTCCTGAGTCTCAGGGGGACTTCATTAGGTGGTGCCAACTTGGGGGACTCTGGGCTTT 164182 ||| ||||| | || || || || | | | ||||| ||| | || || || ||| |||| Sbjct 35099 GGGCCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTT 35158 Query 164183 TGTGGCGTTCCACGGATCTTTCGCTCTGATCGGTTTCATGCTTCGGCAGTTTGAAATTGC 164242 ||| || ||||||| |||||| || || ||||||||| | || || |||||| |||| Sbjct 35159 TGTTGCTCTCCACGGTGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGC 35218 Query 164243 ACGTCTTGTAGGTATCCGTCCGTACAATGCTATTGCGTTCTCTGGTCCGATTGCTGTCTT 164302 || ||| | || || || ||||| || || ||||| || || |||||||| || Sbjct 35219 TCGATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCGGGCCCAATTGCTGTTTT 35278 Query 164303 TGTCAGCGTTTTCCTTATGTACCCTCTCGGGCAATCTAGTTGGTTCTTTGCCCCCTCGTT 164362 ||| || ||||| || || || || || || ||| ||||||||||||| || || Sbjct 35279 TGTTTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTT 35338 Query 164363 TGGGGTCGCGGCGATCTTCAGATTCCTCTTGTTCCTCCAAGGTTTCCATAACTGGACACT 164422 ||| || || || || || ||||| || | || ||||||| || ||||| |||||| | Sbjct 35339 TGGTGTAGCAGCTATATTTCGATTCATCCTATTTTTCCAAGGGTTTCATAATTGGACATT 35398 Query 164423 CAACCCCTTCCATATGATGGGTGTTGCAGGCATCCTTGGTGGTGCTCTTCTCTGTGCTAT 164482 ||||| || ||||||||||| ||||| || | | || | |||||| || || ||||| Sbjct 35399 GAACCCATTTCATATGATGGGAGTTGCGGGGGTATTGGGCGCTGCTCTGCTATGCGCTAT 35458 Query 164483 TCATGGTGCTACCGTAGAGAATACTTTGTTTGAAGATGGTGAACAATCAAATACTTTCAA 164542 |||||||||||||||||| ||||| || ||||| ||||| || ||||||| ||| Sbjct 35459 TCATGGTGCTACCGTAGAAAATACCTTATTTGAGGATGGGGATGGTGCAAATACATTCCG 35518 Query 164543 GGCATTCGAGCCTACTCAAGAGGAAGAGACTTACTCGATGGTCACTGCCAACCGCTTCTG 164602 || || | || ||||||| ||||| ||||| || ||||||||||| |||||||| || Sbjct 35519 TGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTG 35578 Query 164603 GTCTCAGATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTCTT 164662 ||| || || ||||| ||||||| |||||| |||||||| || ||||||||| | || Sbjct 35579 GTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATT 35638 Query 164663 TGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTCAATCT 164722 ||| || || | || | |||| ||| || |||| | | ||||| || || || || Sbjct 35639 TGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTTGGTCTGGCCCTGAACCT 35698 Query 164723 TCGTGCTTATGATTTTGTGTCTCAGGAGATTAGAGCAGCAGAGGATCCTGAATTTGAGAC 164782 ||||| ||||| || || |||||||| || | ||||| || ||||| ||||||||||| Sbjct 35699 ACGTGCCTATGACTTCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGAC 35758 Query 164783 GTTCTATACGAAGAACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTAGA 164842 |||||||| || || || ||| | || ||||| | ||||| |||||||| | ||| Sbjct 35759 TTTCTATACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGA 35818 Query 164843 CCAGCCACACGAATCGTTTGTATTTCCAGAGGAAGTTCTTCCGAGAGGTAACGCACTCTA 164902 ||||| || ||| || |||| || ||||| ||||| || | || ||||| || || Sbjct 35819 TCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCTTTA 35878 Query 164903 A 164903 | Sbjct 35879 A 35879 >seq1 Length=29149675 Score = 165 bits (182), Expect = 9e-36 Identities = 163/211 (77%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 161349 GCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCTCCACCATGGCATTC 161408 || || |||||||| || |||||||||||||| || | ||| | | | ||||| ||| Sbjct 9383827 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACCGCTTTGGGTATTAGCCCTATGGCTTTC 9383886 Query 161409 AACCTGAACGGATTCAACTTCAACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAAC 161468 ||| | || || ||||| |||||||| || | | ||| |||| || || | || Sbjct 9383887 AACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAAT 9383946 Query 161469 ACCTGGGCTGACGTTCTGAATCGTGCTAACCTTGGTATGGAAGTAATGCACGAGCGTAAT 161528 ||||||||||| || | || |||||||| |||||||||||||| ||||| || |||||| Sbjct 9383947 ACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAAT 9384006 Query 161529 GCTCACAACTTCCCTCTGGATCTCGCTGCTG 161559 ||||||||||||||||| || || ||||||| Sbjct 9384007 GCTCACAACTTCCCTCTAGACCTAGCTGCTG 9384037 >seq3 Length=39782674 Score = 127 bits (140), Expect = 2e-24 Identities = 141/188 (75%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 164337 TCTAGTTGGTTCTTTGCCCCCTCGTTTGGGGTCGCGGCGATCTTCAGATTCCTCTTGTTC 164396 ||| ||||||||||||| || ||||| || || || || || ||||| || | | Sbjct 23202869 TCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATCCTACTT 23202928 Query 164397 CTCCAAGGTTTCCATAACTGGACACTCAACCCCTTCCATATGATGGGTGTTGCAGGCATC 164456 ||||||| || ||||| |||||| | ||||| || ||||||||||| ||||| || | Sbjct 23202929 TTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTTGCGGGGGTG 23202988 Query 164457 CTTGGTGGTGCTCTTCTCTGTGCTATTCATGGTGCTACCGTAGAGAATACTTTGTTTGAA 164516 | || | |||| | || || |||||||| |||||||| ||||| ||||| || |||| Sbjct 23202989 TTGGGCGTTGCTTTGCTATGCGCTATTCAGGGTGCTACTGTAGAAAATACCTTACTTGAG 23203048 Query 164517 GATGGTGA 164524 ||||| || Sbjct 23203049 GATGGGGA 23203056 >seq7 Length=19226500 Score = 105 bits (116), Expect = 7e-18 Identities = 78/91 (86%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 161466 AACACCTGGGCTGACGTTCTGAATCGTGCTAACCTTGGTATGGAAGTAATGCACGAGCGT 161525 || ||||||||||| || | || |||||||| |||||||||||||| ||||| || ||| Sbjct 19048888 AATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGT 19048947 Query 161526 AATGCTCACAACTTCCCTCTGGATCTCGCTG 161556 |||||||||||||||||||| || || |||| Sbjct 19048948 AATGCTCACAACTTCCCTCTAGACCTAGCTG 19048978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559326671596000