Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20
2016-05-24] 4,826 sequences; 421,502,825 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq3328 407 2e-111
seq2698 407 2e-111
seq3 407 2e-111
seq4226 358 1e-96
seq4256 176 7e-42
seq5 163 4e-38
seq4344 98.7 1e-18
>seq3328
Length=34111
Score = 407 bits (450), Expect = 2e-111
Identities = 246/256 (96%), Gaps = 3/256 (1%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 7521 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 7464
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 7463 CTCGTTTAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTT 7404
Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 7403 CCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 7344
Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 7343 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 7284
Query 241 GCCAT-CTCCCTCGAA 255
||||| |||||| ||
Sbjct 7283 GCCATAGTCCCTCTAA 7268
>seq2698
Length=84112
Score = 407 bits (450), Expect = 2e-111
Identities = 246/256 (96%), Gaps = 3/256 (1%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 71007 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 71064
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 71065 CTCGTTTAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTT 71124
Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 71125 CCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 71184
Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 71185 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 71244
Query 241 GCCAT-CTCCCTCGAA 255
||||| |||||| ||
Sbjct 71245 GCCATAGTCCCTCTAA 71260
Score = 401 bits (444), Expect = 9e-110
Identities = 245/256 (96%), Gaps = 3/256 (1%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 50957 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 51014
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120
|||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 51015 CTCGTTTAAGACCAACAATTGTAATGATCTATCCCCATCACGATGAAATTTCAAAGATTT 51074
Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 51075 CCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 51134
Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 51135 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 51194
Query 241 GCCAT-CTCCCTCGAA 255
||||| |||||| ||
Sbjct 51195 GCCATAGTCCCTCTAA 51210
>seq3
Length=50312079
Score = 407 bits (450), Expect = 2e-111
Identities = 246/256 (96%), Gaps = 3/256 (1%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 35841606 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 35841663
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 35841664 CTCGTTTAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTT 35841723
Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 35841724 CCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 35841783
Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 35841784 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 35841843
Query 241 GCCAT-CTCCCTCGAA 255
||||| |||||| ||
Sbjct 35841844 GCCATAGTCCCTCTAA 35841859
Score = 273 bits (302), Expect = 3e-71
Identities = 210/245 (86%), Gaps = 3/245 (1%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|| ||||||||||| | ||||||||||| || || |||||||| | |||| || |||| |
Sbjct 112566 GTTCAAAGGGCAGG-ATGTAGTCAACGC-AGGTTAATGACTCGTGTTTACCAGAAATT-C 112510
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120
||| || |||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 112509 CTCATTTAAGATCAACAATTGCAATGATCTATCCCTATCACGATGAAATTTCAAAGATTT 112450
Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180
|||||||||| | ||| ||||||||||| |||||||||||||| ||||||||||
Sbjct 112449 TCCGGACCTGTTGATCAACACTATAGACTCGTTAAATACATCAGTGTAATGCGCGTGCGG 112390
Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240
|||||||||| || | ||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 112389 CCCAGAACATTTACGACTATCACAGACCTGTTATTACCTCAAACTTCTGTGGCCTAAAAG 112330
Query 241 GCCAT 245
| |||
Sbjct 112329 GTCAT 112325
>seq4226
Length=17910
Score = 358 bits (396), Expect = 1e-96
Identities = 238/257 (93%), Gaps = 7/257 (3%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 17252 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 17309
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 17310 CTCGTTTAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTT 17369
Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 17370 CCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 17429
Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG-GCCTAAAA 239
|||||||||||||||||||||||||||||||||||| ||||| || |||| | ||| ||
Sbjct 17430 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT--CGTGCGGCTAGAA 17486
Query 240 GGC-CATCTCCCTCGAA 255
| | | | |||||| ||
Sbjct 17487 GCCGCCTGTCCCTCTAA 17503
Score = 187 bits (206), Expect = 4e-45
Identities = 202/258 (78%), Gaps = 11/258 (4%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| |||| ||| ||| ||||| ||| ||||| |||||| |
Sbjct 5525 GTACAAAGGGCAGGGACGTAATCAAGGCGTGCTA-ATGACACGCCTTTACTGGGAATT-C 5582
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119
|||||| | | ||||||| ||| | ||||| | ||||| | ||||| | ||
Sbjct 5583 CTCGTTCATGGGGAACAATTTCAAGCCCCAATCCCAAGCACGAAGGTGTTTCAGCGGGTT 5642
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
|||||||||| ||||||| || | ||| || ||| | ||| |||||||||||||||
Sbjct 5643 ACCCGGACCTTTCGGCCAGGGAG---GACACGCTGATACCTTCATTGTAGCGCGCGTGCG 5699
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG-GCCTAAA 238
||||||||||||||||||||||||||||||||||||| ||||| || |||| | ||| |
Sbjct 5700 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT--CGTGCGGCTAGA 5756
Query 239 AGGC-CATCTCCCTCGAA 255
|| | | | |||||| ||
Sbjct 5757 AGCCGCCTGTCCCTCTAA 5774
>seq4256
Length=20900
Score = 176 bits (194), Expect = 7e-42
Identities = 177/224 (79%), Gaps = 12/224 (5%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| ||||||| |||| ||||||| |||||||| |||||| |
Sbjct 20135 GTACAAAGGGCAGGGACGTAATCAACGCAAGCTA-ATGACTCACGCTTACTGGGAATT-C 20192
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT---TTCAAA-G 116
|||||| | | ||| |||| ||||| | ||||||||||||| ||| ||||| |
Sbjct 20193 CTCGTTCATGGGCAATAATTACAATGCCCAATCCCCATCACGA---AATGGGTTCAAGCG 20249
Query 117 ATTACCCGGACCTGTCGGCCAAGGTGATAGACT---CGTTGAATACATCAGTGTAGCGCG 173
|||||| ||| |||| ||| | || | || ||| || |||||||||| ||
Sbjct 20250 GTTACCCACTCCTTTCGGAGCAGGAAACAGTATGCACGATGACCACTTCAGTGTAGCACG 20309
Query 174 CGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217
|||||||||| | |||||||||||||||||||||||||||||||
Sbjct 20310 CGTGCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 20353
>seq5
Length=41956025
Score = 163 bits (180), Expect = 4e-38
Identities = 99/102 (97%), Gaps = 2/102 (2%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 17352263 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 17352320
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG 102
|||||| |||||||||||||||||||||||||||||||||||
Sbjct 17352321 CTCGTTTAAGACCAACAATTGCAATGATCTATCCCCATCACG 17352362
>seq4344
Length=2483
Score = 98.7 bits (108), Expect = 1e-18
Identities = 63/66 (95%), Gaps = 2/66 (3%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||
Sbjct 2418 GTACAAAGGGCAGGGACGTATTCAACGCGAGC-TGATGACTCGCGCTTACTAGGAA-TTC 2475
Query 61 CTCGTT 66
||||||
Sbjct 2476 CTCGTT 2481
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 751964842590
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