Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20
2016-05-24] 4,826 sequences; 421,502,825 total letters
Query= AAMG01000190.1
Length=117
Score E
Sequences producing significant alignments: (Bits) Value
seq3328 122 5e-26
seq2698 122 5e-26
seq3 122 5e-26
seq4256 75.2 6e-12
>seq3328
Length=34111
Score = 122 bits (134), Expect = 5e-26
Identities = 97/117 (83%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||| ||||||||||||| ||||||||| ||||| || |||||| |
Sbjct 6991 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCAGTGGAGTCCTAAAAGCAACATCCACT 6932
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 6931 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 6875
>seq2698
Length=84112
Score = 122 bits (134), Expect = 5e-26
Identities = 97/117 (83%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||| ||||||||||||| ||||||||| ||||| || |||||| |
Sbjct 51487 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCAGTGGAGTCCTAAAAGCAACATCCACT 51546
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 51547 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 51603
Score = 122 bits (134), Expect = 5e-26
Identities = 97/117 (83%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||| ||||||||||||| ||||||||| ||||| || |||||| |
Sbjct 71537 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCAGTGGAGTCCTAAAAGCAACATCCACT 71596
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 71597 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 71653
>seq3
Length=50312079
Score = 122 bits (134), Expect = 5e-26
Identities = 97/117 (83%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||||||||||||||||| |||||||| | ||||| | |||||| ||
Sbjct 35842136 GAACCCAAAGACTTTGATTTCTCATAAGGTGCTGGCGGAGTCCTTAAAGCAACATCCGCC 35842195
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 35842196 AATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 35842252
Score = 95.1 bits (104), Expect = 7e-18
Identities = 84/105 (80%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 13 TTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCGATCCCTAGTCG 72
||||||||||| ||||||| | |||||| || |||||| || ||| ||| ||||
Sbjct 112064 TTTGATTTCTCATAAGGTGTCAGTCGAGTCCTAAAAGCAACATCCCCTGATTCCTGGTCG 112005
Query 73 GCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|||| ||||| |||| ||||| ||||||||||||| ||||||||
Sbjct 112004 GCATCGTTTATGGTTGAGACTGGGACGGTATCTGATAGTCTTCGA 111960
>seq4256
Length=20900
Score = 75.2 bits (82), Expect = 6e-12
Identities = 90/120 (75%), Gaps = 3/120 (3%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCA--AAATGA-TAACATCG 57
||||||||| |||||| |||| || ||| | || ||||||| |||| | | || |
Sbjct 20780 GAACCCAAAAACTTTGGTTTCCCGGAAGCTTCCATTCGAGTCATGAAATTAGTTACTCAG 20839
Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|||| || || ||||| ||||| ||||| |||| | ||||||||||||| ||||||
Sbjct 20840 AATGATCGCTGGTTGGCATCGTTTATGGTTAGAACTAGGGCGGTATCTGATCGCCTTCGA 20899
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 278387404140
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |