Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq3328 122 5e-26 seq2698 122 5e-26 seq3 122 5e-26 seq4256 75.2 6e-12 >seq3328 Length=34111 Score = 122 bits (134), Expect = 5e-26 Identities = 97/117 (83%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| ||||||||| ||||| || |||||| | Sbjct 6991 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCAGTGGAGTCCTAAAAGCAACATCCACT 6932 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 6931 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 6875 >seq2698 Length=84112 Score = 122 bits (134), Expect = 5e-26 Identities = 97/117 (83%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| ||||||||| ||||| || |||||| | Sbjct 51487 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCAGTGGAGTCCTAAAAGCAACATCCACT 51546 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 51547 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 51603 Score = 122 bits (134), Expect = 5e-26 Identities = 97/117 (83%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| ||||||||| ||||| || |||||| | Sbjct 71537 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCAGTGGAGTCCTAAAAGCAACATCCACT 71596 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 71597 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 71653 >seq3 Length=50312079 Score = 122 bits (134), Expect = 5e-26 Identities = 97/117 (83%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||||||||||| |||||||| | ||||| | |||||| || Sbjct 35842136 GAACCCAAAGACTTTGATTTCTCATAAGGTGCTGGCGGAGTCCTTAAAGCAACATCCGCC 35842195 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 35842196 AATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 35842252 Score = 95.1 bits (104), Expect = 7e-18 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 13 TTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCGATCCCTAGTCG 72 ||||||||||| ||||||| | |||||| || |||||| || ||| ||| |||| Sbjct 112064 TTTGATTTCTCATAAGGTGTCAGTCGAGTCCTAAAAGCAACATCCCCTGATTCCTGGTCG 112005 Query 73 GCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| ||||| |||| ||||| ||||||||||||| |||||||| Sbjct 112004 GCATCGTTTATGGTTGAGACTGGGACGGTATCTGATAGTCTTCGA 111960 >seq4256 Length=20900 Score = 75.2 bits (82), Expect = 6e-12 Identities = 90/120 (75%), Gaps = 3/120 (3%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCA--AAATGA-TAACATCG 57 ||||||||| |||||| |||| || ||| | || ||||||| |||| | | || | Sbjct 20780 GAACCCAAAAACTTTGGTTTCCCGGAAGCTTCCATTCGAGTCATGAAATTAGTTACTCAG 20839 Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| || || ||||| ||||| ||||| |||| | ||||||||||||| |||||| Sbjct 20840 AATGATCGCTGGTTGGCATCGTTTATGGTTAGAACTAGGGCGGTATCTGATCGCCTTCGA 20899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278387404140