Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20
2016-05-24] 4,826 sequences; 421,502,825 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq2698 235 1e-59
seq3328 233 4e-59
seq3 233 4e-59
seq5 158 2e-36
seq4503 140 6e-31
>seq2698
Length=84112
Score = 235 bits (260), Expect = 1e-59
Identities = 207/254 (81%), Gaps = 3/254 (1%)
Strand=Plus/Minus
Query 66 CCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACAT 124
|||| || |||||||||| ||||||||||| |||||||| |||| |||| | ||||||
Sbjct 51856 CCAGCGCTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACAT 51797
Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184
|||||||| |||| | |||||| | |||| ||||| ||||| | ||| || ||
Sbjct 51796 TAGCATGGGATAACATCATAGGATTT-CGGTCCTATTACGTTGGCCTTCGGGATCGGAGT 51738
Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244
||||||||| ||||| ||||||||| | ||||| || ||||||||||||||||||||
Sbjct 51737 AATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGG 51678
Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304
|||||| ||||| ||| ||||||||||| || |||||||||||||||||||||| ||
Sbjct 51677 ATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGA 51619
Query 305 ACGAAAGTTAGGGG 318
||||||||| ||||
Sbjct 51618 ACGAAAGTTGGGGG 51605
Score = 233 bits (258), Expect = 4e-59
Identities = 203/248 (82%), Gaps = 3/248 (1%)
Strand=Plus/Minus
Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130
|| |||||||||| ||||||||||| |||||||| |||| |||| | ||||||||||||
Sbjct 71900 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 71841
Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190
|| |||| | |||||| | |||| ||||| ||||| | ||| || ||||||||
Sbjct 71840 GGGATAACATCATAGGATTT-CGGTCCTATTACGTTGGCCTTCGGGATCGGAGTAATGAT 71782
Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250
||| ||||| ||||||||| | ||||| || ||||||||||||||||||||||||||
Sbjct 71781 TAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 71722
Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310
||||| ||| ||||||||||| || |||||||||||||||||||||| ||||||||
Sbjct 71721 GAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAA 71663
Query 311 GTTAGGGG 318
||| ||||
Sbjct 71662 GTTGGGGG 71655
>seq3328
Length=34111
Score = 233 bits (258), Expect = 4e-59
Identities = 203/248 (82%), Gaps = 3/248 (1%)
Strand=Plus/Plus
Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130
|| |||||||||| ||||||||||| |||||||| |||| |||| | ||||||||||||
Sbjct 6628 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 6687
Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190
|| |||| | |||||| | |||| ||||| ||||| | ||| || ||||||||
Sbjct 6688 GGGATAACATCATAGGATTT-CGGTCCTATTACGTTGGCCTTCGGGATCGGAGTAATGAT 6746
Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250
||| ||||| ||||||||| | ||||| || ||||||||||||||||||||||||||
Sbjct 6747 TAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 6806
Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310
||||| ||| ||||||||||| || |||||||||||||||||||||| ||||||||
Sbjct 6807 GAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAA 6865
Query 311 GTTAGGGG 318
||| ||||
Sbjct 6866 GTTGGGGG 6873
>seq3
Length=50312079
Score = 233 bits (258), Expect = 4e-59
Identities = 203/248 (82%), Gaps = 3/248 (1%)
Strand=Plus/Minus
Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130
|| |||||||||| ||||||||||| |||||||| |||| |||| | ||||||||||||
Sbjct 35842499 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 35842440
Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190
|| |||| | |||||| | |||| ||||| ||||| | ||| || ||||||||
Sbjct 35842439 GGGATAACATCATAGGATTT-CGGTCCTATTACGTTGGCCTTCGGGATCGGAGTAATGAT 35842381
Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250
||| ||||| ||||||||| | ||||| || ||||||||||||||||||||||||||
Sbjct 35842380 TAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 35842321
Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310
||||| ||| ||||||||||| || |||||||||||||||||||||| ||||||||
Sbjct 35842320 GAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAA 35842262
Query 311 GTTAGGGG 318
||| ||||
Sbjct 35842261 GTTGGGGG 35842254
Score = 147 bits (162), Expect = 4e-33
Identities = 155/200 (78%), Gaps = 3/200 (2%)
Strand=Plus/Plus
Query 119 ATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGAC 178
|| || |||||||| |||| | |||||| | |||| |||| ||||| | |||
Sbjct 111762 ATCCACTAGCATGGGATAACATCATAGGATTT-CGGTCATATTACGTTGGCCTTCGGGAT 111820
Query 179 CGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAAT 238
|| ||||||||||| |||| |||||||| || |||| || ||||||||||||||
Sbjct 111821 CGGAGTAATGATTAACTGGGACAGTCGGGGCATTCC-TATTTCATAGTCAGAGGTGAAAT 111879
Query 239 TCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAAT 298
| ||| |||||| ||||| ||| ||||||||||| || ||||||||||||||||||||
Sbjct 111880 TATTGAATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAAT 111939
Query 299 CAGTGAACGAAAGTTAGGGG 318
|| ||||||||| | ||||
Sbjct 111940 CA-AGAACGAAAGCTGGGGG 111958
>seq5
Length=41956025
Score = 158 bits (174), Expect = 2e-36
Identities = 133/162 (82%), Gaps = 1/162 (1%)
Strand=Plus/Plus
Query 157 CTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGT 216
||||| ||||| | ||| || ||||||||||| ||||| ||||||||| | ||
Sbjct 17357300 CTATTACGTTGGCCTTCGGGATCGGAGTAATGATTAACAGGGACAGTCGGGGGCATTCGT 17357359
Query 217 ATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTT 276
||| || |||||||||||||||||||||||||| ||||| ||| ||||||||||| ||
Sbjct 17357360 ATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCGAAAGCATT 17357419
Query 277 CACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318
|||||||||||||||||||||| ||||||||||| ||||
Sbjct 17357420 TGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGTTGGGGG 17357460
>seq4503
Length=10536
Score = 140 bits (154), Expect = 6e-31
Identities = 145/186 (78%), Gaps = 3/186 (2%)
Strand=Plus/Minus
Query 127 GCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA-CCGCCGTA 185
|||||||||||| ||||||||| | ||||||||||||||||| | || | || |||
Sbjct 184 GCATGGAATAATGGAATAGGACCTT-GGTTCTATTTTGTTGGTCTTAAGAATCCAAGGTA 126
Query 186 ATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA 245
|||||||| ||||| || |||||| | ||||| | ||||||||||||||||||
Sbjct 125 ATGATTAAGAGGGACAGACGGGGGCATTTGTATTGCGGCGCTAGAGGTGAAATTCTTGGA 66
Query 246 TTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAA 305
||||| |||||| |||||||| || ||||| |||||||||||||||| |||
Sbjct 65 CCGTCGCAAGACAAACTACAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAA 7
Query 306 CGAAAG 311
||||||
Sbjct 6 CGAAAG 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 915155832448
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |