Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= AAMG01000567.1 Length=197 Score E Sequences producing significant alignments: (Bits) Value seq4825 96.9 4e-18 seq1 96.9 4e-18 seq7 91.5 2e-16 seq4826 86.0 7e-15 seq1670 86.0 7e-15 seq5 84.2 2e-14 >seq4825 Length=155848 Score = 96.9 bits (106), Expect = 4e-18 Identities = 123/166 (74%), Gaps = 4/166 (2%) Strand=Plus/Plus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGT-TAAG 83 |||| |||||| |||| ||| || |||| ||| || ||| || | | | |||| Sbjct 106528 AAACCGACACAGGTAGGTAGGTAGAGAATACCTAGGGGCGCGAGACAA-CTCTCTCTAAG 106586 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGAGG 143 ||||| |||||| | ||| |||||||||||| || |||| ||| | || ||| || || Sbjct 106587 GAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--GGGGG 106644 Query 144 GCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 ||||| || ||| || ||| |||||||| |||||||||||| || Sbjct 106645 TCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 106690 Score = 96.9 bits (106), Expect = 4e-18 Identities = 123/166 (74%), Gaps = 4/166 (2%) Strand=Plus/Minus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGT-TAAG 83 |||| |||||| |||| ||| || |||| ||| || ||| || | | | |||| Sbjct 133513 AAACCGACACAGGTAGGTAGGTAGAGAATACCTAGGGGCGCGAGACAA-CTCTCTCTAAG 133455 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGAGG 143 ||||| |||||| | ||| |||||||||||| || |||| ||| | || ||| || || Sbjct 133454 GAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--GGGGG 133397 Query 144 GCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 ||||| || ||| || ||| |||||||| |||||||||||| || Sbjct 133396 TCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 133351 >seq1 Length=51465339 Score = 96.9 bits (106), Expect = 4e-18 Identities = 123/166 (74%), Gaps = 4/166 (2%) Strand=Plus/Minus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGT-TAAG 83 |||| |||||| |||| ||| || |||| ||| || ||| || | | | |||| Sbjct 16911161 AAACCGACACAGGTAGGTAGGTAGAGAATACCTAGGGGCGCGAGACAA-CTCTCTCTAAG 16911103 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGAGG 143 ||||| |||||| | ||| |||||||||||| || |||| ||| | || ||| || || Sbjct 16911102 GAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--GGGGG 16911045 Query 144 GCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 ||||| || ||| || ||| |||||||| |||||||||||| || Sbjct 16911044 TCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 16910999 >seq7 Length=36358036 Score = 91.5 bits (100), Expect = 2e-16 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83 ||||| |||||| || | || || ||||||| |||||||||| ||| || | ||| Sbjct 11507724 CAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAAG 11507783 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGT 123 ||||| |||||| |||||| ||||||||||||||| |||| Sbjct 11507784 GAACTCGGCAAAATGACCCCGTAACTTCGGGATAAGGGGT 11507823 >seq4826 Length=244980 Score = 86.0 bits (94), Expect = 7e-15 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83 ||||| |||||| || | || || ||||||| |||||||||| ||| || | ||| Sbjct 88502 CAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAAG 88443 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGT 123 ||||| |||||| |||||| |||||||||||| || |||| Sbjct 88442 GAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGT 88403 >seq1670 Length=24701 Score = 86.0 bits (94), Expect = 7e-15 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83 ||||| |||||| || | || || ||||||| |||||||||| ||| || | ||| Sbjct 22600 CAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAAG 22659 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGT 123 ||||| |||||| |||||| |||||||||||| || |||| Sbjct 22660 GAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGT 22699 >seq5 Length=41956025 Score = 84.2 bits (92), Expect = 2e-14 Identities = 85/110 (77%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| ||||||| |||| || || | ||| | || ||| || Sbjct 30123267 TAAGGAACTCGGCAAAATAGCCCCGTAACTTTGGGAGAAGGGCTGCCTCCTCACAAAGGG 30123208 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | | ||||| || ||| || ||| |||||||| |||||||||||| || Sbjct 30123207 G--GTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 30123160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531175165404