Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20
2016-05-24] 4,826 sequences; 421,502,825 total letters
Query= AAMG01000567.1
Length=197
Score E
Sequences producing significant alignments: (Bits) Value
seq4825 96.9 4e-18
seq1 96.9 4e-18
seq7 91.5 2e-16
seq4826 86.0 7e-15
seq1670 86.0 7e-15
seq5 84.2 2e-14
>seq4825
Length=155848
Score = 96.9 bits (106), Expect = 4e-18
Identities = 123/166 (74%), Gaps = 4/166 (2%)
Strand=Plus/Plus
Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGT-TAAG 83
|||| |||||| |||| ||| || |||| ||| || ||| || | | | ||||
Sbjct 106528 AAACCGACACAGGTAGGTAGGTAGAGAATACCTAGGGGCGCGAGACAA-CTCTCTCTAAG 106586
Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGAGG 143
||||| |||||| | ||| |||||||||||| || |||| ||| | || ||| || ||
Sbjct 106587 GAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--GGGGG 106644
Query 144 GCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189
||||| || ||| || ||| |||||||| |||||||||||| ||
Sbjct 106645 TCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 106690
Score = 96.9 bits (106), Expect = 4e-18
Identities = 123/166 (74%), Gaps = 4/166 (2%)
Strand=Plus/Minus
Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGT-TAAG 83
|||| |||||| |||| ||| || |||| ||| || ||| || | | | ||||
Sbjct 133513 AAACCGACACAGGTAGGTAGGTAGAGAATACCTAGGGGCGCGAGACAA-CTCTCTCTAAG 133455
Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGAGG 143
||||| |||||| | ||| |||||||||||| || |||| ||| | || ||| || ||
Sbjct 133454 GAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--GGGGG 133397
Query 144 GCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189
||||| || ||| || ||| |||||||| |||||||||||| ||
Sbjct 133396 TCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 133351
>seq1
Length=51465339
Score = 96.9 bits (106), Expect = 4e-18
Identities = 123/166 (74%), Gaps = 4/166 (2%)
Strand=Plus/Minus
Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGT-TAAG 83
|||| |||||| |||| ||| || |||| ||| || ||| || | | | ||||
Sbjct 16911161 AAACCGACACAGGTAGGTAGGTAGAGAATACCTAGGGGCGCGAGACAA-CTCTCTCTAAG 16911103
Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGAGG 143
||||| |||||| | ||| |||||||||||| || |||| ||| | || ||| || ||
Sbjct 16911102 GAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--GGGGG 16911045
Query 144 GCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189
||||| || ||| || ||| |||||||| |||||||||||| ||
Sbjct 16911044 TCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 16910999
>seq7
Length=36358036
Score = 91.5 bits (100), Expect = 2e-16
Identities = 80/100 (80%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83
||||| |||||| || | || || ||||||| |||||||||| ||| || | |||
Sbjct 11507724 CAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAAG 11507783
Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGT 123
||||| |||||| |||||| ||||||||||||||| ||||
Sbjct 11507784 GAACTCGGCAAAATGACCCCGTAACTTCGGGATAAGGGGT 11507823
>seq4826
Length=244980
Score = 86.0 bits (94), Expect = 7e-15
Identities = 79/100 (79%), Gaps = 0/100 (0%)
Strand=Plus/Minus
Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83
||||| |||||| || | || || ||||||| |||||||||| ||| || | |||
Sbjct 88502 CAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAAG 88443
Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGT 123
||||| |||||| |||||| |||||||||||| || ||||
Sbjct 88442 GAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGT 88403
>seq1670
Length=24701
Score = 86.0 bits (94), Expect = 7e-15
Identities = 79/100 (79%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83
||||| |||||| || | || || ||||||| |||||||||| ||| || | |||
Sbjct 22600 CAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAAG 22659
Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGT 123
||||| |||||| |||||| |||||||||||| || ||||
Sbjct 22660 GAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGT 22699
>seq5
Length=41956025
Score = 84.2 bits (92), Expect = 2e-14
Identities = 85/110 (77%), Gaps = 2/110 (2%)
Strand=Plus/Minus
Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139
||||||||| |||||| | ||| ||||||| |||| || || | ||| | || ||| ||
Sbjct 30123267 TAAGGAACTCGGCAAAATAGCCCCGTAACTTTGGGAGAAGGGCTGCCTCCTCACAAAGGG 30123208
Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189
| | ||||| || ||| || ||| |||||||| |||||||||||| ||
Sbjct 30123207 G--GTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 30123160
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531175165404
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |