Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq3328 302 7e-80 seq2698 302 7e-80 seq3 302 7e-80 seq4226 246 5e-63 seq4256 179 6e-43 >seq3328 Length=34111 Score = 302 bits (334), Expect = 7e-80 Identities = 224/259 (86%), Gaps = 2/259 (1%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7377 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 7318 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||| | | || ||| | |||||||||||||||||| ||| Sbjct 7317 CCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCATAGTCCCTCTAAGAAGCTGGCC 7258 Query 122 ACCAACCA-TAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 || || || | |||| |||||||| | ||||||||||||||| ||||||| Sbjct 7257 GTGAAGGTGTACCTCCACATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATT 7198 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7197 AACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 7138 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||| ||| |||||| Sbjct 7137 AAAGAGCTCTCAGTCTGTC 7119 >seq2698 Length=84112 Score = 302 bits (334), Expect = 7e-80 Identities = 224/259 (86%), Gaps = 2/259 (1%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 51101 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 51160 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||| | | || ||| | |||||||||||||||||| ||| Sbjct 51161 CCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCATAGTCCCTCTAAGAAGCTGGCC 51220 Query 122 ACCAACCA-TAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 || || || | |||| |||||||| | ||||||||||||||| ||||||| Sbjct 51221 GTGAAGGTGTACCTCCACATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATT 51280 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 51281 AACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 51340 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||| ||| |||||| Sbjct 51341 AAAGAGCTCTCAGTCTGTC 51359 Score = 298 bits (330), Expect = 9e-79 Identities = 223/259 (86%), Gaps = 2/259 (1%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 71151 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 71210 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||| | | || ||| | |||||||||||||||||| ||| Sbjct 71211 CCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCATAGTCCCTCTAAGAAGCTGGCC 71270 Query 122 ACCAACCA-TAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 || || || | |||| |||||||| | ||| ||||||||||| ||||||| Sbjct 71271 GTGAAGGTGTACCTCCACATAGCTAGTTAGCAGGCTGAGGGCTCGTTCGTTAACGGAATT 71330 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 71331 AACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 71390 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||| ||| |||||| Sbjct 71391 AAAGAGCTCTCAGTCTGTC 71409 >seq3 Length=50312079 Score = 302 bits (334), Expect = 7e-80 Identities = 224/259 (86%), Gaps = 2/259 (1%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 35841750 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 35841809 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||| | | || ||| | |||||||||||||||||| ||| Sbjct 35841810 CCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCATAGTCCCTCTAAGAAGCTGGCC 35841869 Query 122 ACCAACCA-TAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 || || || | |||| |||||||| | ||||||||||||||| ||||||| Sbjct 35841870 GTGAAGGTGTACCTCCACATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATT 35841929 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 35841930 AACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 35841989 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||| ||| |||||| Sbjct 35841990 AAAGAGCTCTCAGTCTGTC 35842008 Score = 181 bits (200), Expect = 2e-43 Identities = 182/235 (77%), Gaps = 16/235 (7%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||| |||||||||||||||||||| || | ||||||||||||||||| |||| Sbjct 112409 TCAGTGTAATGCGCGTGCGGCCCAGAACATTTACGACTATCACAGACCTGTTATTACCTC 112350 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTC---CCTCTAAGAAGCCAGCCACCAACCATAG 132 ||||||| | | || ||| ||| | || |||| | || ||| ||||| Sbjct 112349 AAACTTCTGTGGCCTAAAAGGTCATAAGCTGGCCGTGAAGATGTA--CCTCCA--CATAG 112294 Query 133 TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATC 192 ||| |||||||||| || ||| ||| |||| || ||||||||||||||||| Sbjct 112293 ---------CTAGTTAGCAGGTTGAGATCTTGTTTGTTAACGAAATTAACCAGACAAATC 112243 Query 193 ACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 ||||||||||||| ||| || ||||||||||||||||||||||||||||||||| Sbjct 112242 GCTCCACCAACTAAAAACAGCTATGCACCACCACCCATAGAATCAAGAAAGAGCT 112188 >seq4226 Length=17910 Score = 246 bits (272), Expect = 5e-63 Identities = 219/271 (81%), Gaps = 16/271 (6%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 17396 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 17455 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG------ 115 ||||||||||| |||| || | |||| |||||| |||||||||||||| Sbjct 17456 CCTGTTATTGC-TCAATCT-CGTGCGGCTAGAAGCCGCCTGTCCCTCTAAGAAGATTTGT 17513 Query 116 -----CCAGC--CACCAACCATAGTCG-ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTC 167 || || || ||| || || | | ||| |||||||| || ||||||||| Sbjct 17514 CTTCGCCGGCTGCAACAAAGGAAGCCGGAAACGACTAGTTAGCAGGCTAGAGTCTCGTTC 17573 Query 168 GTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACC 227 ||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||| Sbjct 17574 GTTATCGCAATTAAGCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACC 17633 Query 228 CATAGAATCAAGAAAGAGCTATCAATCTGTC 258 || |||||||||||||||| |||||||||| Sbjct 17634 CACTGAATCAAGAAAGAGCTCTCAATCTGTC 17664 Score = 244 bits (270), Expect = 2e-62 Identities = 212/260 (82%), Gaps = 16/260 (6%) Strand=Plus/Plus Query 13 CCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 72 || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5678 CCTTCATTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 5737 Query 73 CTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG-----------CCAGC- 120 |||| || | |||| |||||| |||||||||||||| || || Sbjct 5738 -TCAATCT-CGTGCGGCTAGAAGCCGCCTGTCCCTCTAAGAAGATTTGTCTTCGCCGGCT 5795 Query 121 -CACCAACCATAGTCG-ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178 || ||| | || || | | ||| |||||||| || |||||||||||||||| ||| Sbjct 5796 GCAACAAACGAAGCCGGAAACGACTAGTTAGCAGGCTAGAGTCTCGTTCGTTATCGCAAT 5855 Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238 ||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||| Sbjct 5856 TAAGCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACTGAATCAA 5915 Query 239 GAAAGAGCTATCAATCTGTC 258 ||||||||| |||||||||| Sbjct 5916 GAAAGAGCTCTCAATCTGTC 5935 >seq4256 Length=20900 Score = 179 bits (198), Expect = 6e-43 Identities = 110/117 (94%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 20536 CTATTTAGTAGGCTAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 20595 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||||| |||||||||||||||| |||||||||| Sbjct 20596 ACTAAGAACGGCCATGCACCACCACCCACTGAATCAAGAAAGAGCTCTCAATCTGTC 20652 Score = 89.7 bits (98), Expect = 8e-16 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 72 |||||||||| |||||||||||| | ||||||||||||||||||||||||||||||| Sbjct 20297 TCAGTGTAGCACGCGTGCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 20353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796762748106