Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20
2016-05-24] 4,826 sequences; 421,502,825 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq2698 408 7e-112
seq3335 390 2e-106
seq4226 329 6e-88
seq2 181 2e-43
seq788 111 3e-22
seq4534 107 3e-21
seq5 102 1e-19
seq4256 95.1 2e-17
seq4503 77.0 6e-12
>seq2698
Length=84112
Score = 408 bits (452), Expect = 7e-112
Identities = 267/293 (91%), Gaps = 1/293 (0%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
||||| | ||||||| |||| | | || |||||||||||||||||||||||||||||||
Sbjct 47160 TACTAGGTTGAATTACTATTGCGAC-ACTGTCATCAGTAGGGTAAAACTAACCTGTCTCA 47218
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120
||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||
Sbjct 47219 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 47278
Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 47279 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 47338
Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 47339 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 47398
Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293
|||||| ||| || ||||||||||| |||||||| |||||| |||| ||||||
Sbjct 47399 CAAATTCCGAAGGTCTAAAGGATCGTTAGGCCACGCTTTCACGGTTCGTATTC 47451
Score = 408 bits (452), Expect = 7e-112
Identities = 267/293 (91%), Gaps = 1/293 (0%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
||||| | ||||||| |||| | | || |||||||||||||||||||||||||||||||
Sbjct 60910 TACTAGGTTGAATTACTATTGCGAC-ACTGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60968
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120
||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||
Sbjct 60969 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 61028
Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61029 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 61088
Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 61089 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 61148
Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293
|||||| ||| || ||||||||||| |||||||| |||||| |||| ||||||
Sbjct 61149 CAAATTCCGAAGGTCTAAAGGATCGTTAGGCCACGCTTTCACGGTTCGTATTC 61201
Score = 408 bits (452), Expect = 7e-112
Identities = 267/293 (91%), Gaps = 1/293 (0%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
||||| | ||||||| |||| | | || |||||||||||||||||||||||||||||||
Sbjct 80391 TACTAGGTTGAATTACTATTGCGAC-ACTGTCATCAGTAGGGTAAAACTAACCTGTCTCA 80449
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120
||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||
Sbjct 80450 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 80509
Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 80510 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 80569
Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 80570 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 80629
Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293
|||||| ||| || ||||||||||| |||||||| |||||| |||| ||||||
Sbjct 80630 CAAATTCCGAAGGTCTAAAGGATCGTTAGGCCACGCTTTCACGGTTCGTATTC 80682
Score = 403 bits (446), Expect = 3e-110
Identities = 266/293 (91%), Gaps = 1/293 (0%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
||||| | ||||||| |||| | | || |||||||||||||||||||||||||||||||
Sbjct 67233 TACTAGGTTGAATTACTATTGCGAC-ACTGTCATCAGTAGGGTAAAACTAACCTGTCTCA 67291
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120
||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||
Sbjct 67292 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 67351
Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 67352 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 67411
Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 67412 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 67471
Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293
|||||| ||| || ||||||||||| |||||||| |||||| |||| |||||
Sbjct 67472 CAAATTCCGAAGGTCTAAAGGATCGTTAGGCCACGCTTTCACGGTTCATATTC 67524
>seq3335
Length=3421
Score = 390 bits (432), Expect = 2e-106
Identities = 264/293 (90%), Gaps = 2/293 (1%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
||||| | ||||||| |||| | | || |||||||||||||||||||||||||||||||
Sbjct 1724 TACTAGGTTGAATTACTATTGCGAC-ACTGTCATCAGTAGGGTAAAACTAACCTGTCTCA 1666
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120
||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||
Sbjct 1665 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 1606
Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1605 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 1546
Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 1545 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 1486
Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293
||| || | | ||||||||||||||||||| |||||| |||||||||||
Sbjct 1485 AAAACTTGTAAAG-TTAAAGGATCGATAGGCCACGCTTTCACGGTTTGTATTC 1434
Score = 109 bits (120), Expect = 9e-22
Identities = 62/63 (98%), Gaps = 0/63 (0%)
Strand=Plus/Minus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1979 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 1920
Query 91 TTA 93
|||
Sbjct 1919 TTA 1917
>seq4226
Length=17910
Score = 329 bits (364), Expect = 6e-88
Identities = 232/265 (88%), Gaps = 0/265 (0%)
Strand=Plus/Plus
Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 217 GTCATCAGAAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCT 276
Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149
||| | ||||||||||||| |||||| |||||||||||||| ||||||||||||||||
Sbjct 277 ATTTGCGGGTGAACAATCCGACGCTTGGCGAATTCTGCTTCGCAATGATAGGAAGAGCCG 336
Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 337 ACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATC 396
Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAG 269
|||||||||| ||||||| |||||| || | ||| | | | |||||||| ||
Sbjct 397 CCTGTGGTAATTTTTCTGACACCTCCTGCTTAAAACCCAAAAAGCCAGAAGGATCGTGAG 456
Query 270 GCCACACTTTCATGGTTTGTATTCA 294
||| | |||||| ||| ||||||||
Sbjct 457 GCCCCGCTTTCACGGTCTGTATTCA 481
>seq2
Length=43913520
Score = 181 bits (200), Expect = 2e-43
Identities = 114/123 (93%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 51 ACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAA 110
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 13498540 ACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAA 13498599
Query 111 CGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCA 170
| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 13498600 CACTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCA 13498659
Query 171 ACG 173
|||
Sbjct 13498660 ACG 13498662
>seq788
Length=963
Score = 111 bits (122), Expect = 3e-22
Identities = 69/73 (95%), Gaps = 1/73 (1%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
|||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 892 TACTAAGCGGTATTACCATTGGGGCAA-GGTCATCAGTAGGGTAAAACTAACCTGTCTCA 950
Query 61 TGACGGTCTAAAC 73
||||||||||||
Sbjct 951 CGACGGTCTAAAC 963
>seq4534
Length=645
Score = 107 bits (118), Expect = 3e-21
Identities = 68/74 (92%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
|||||||| |||||||||||| || ||| ||||||||||||||||||||||||||||||
Sbjct 74 TACTAAGCTGAATTACCATTGCGGTGACATTCATCAGTAGGGTAAAACTAACCTGTCTCA 15
Query 61 TGACGGTCTAAACC 74
|||||||||||||
Sbjct 14 CGACGGTCTAAACC 1
>seq5
Length=41956025
Score = 102 bits (112), Expect = 1e-19
Identities = 142/197 (72%), Gaps = 3/197 (2%)
Strand=Plus/Minus
Query 87 CCTATTAGTGGGTGAACAATCCAACGCTTA--CCGAATTCTGCTTCGGTATGATAGGAAG 144
|||||| | ||| ||||||||||| || | | || |||| ||| | ||| ||
Sbjct 33008425 CCTATTGATAGGTAAACAATCCAACACTCAGTGCAAACTCTGTTTCACAACAATA-AAAA 33008367
Query 145 AGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAG 204
| ||||||| ||| | ||| | ||||| ||| |||||| || || |||| ||| ||
Sbjct 33008366 AACCGACATAAAAGTAAAAAACAACAACGCCGCAATGAACATTTAGCCGCCATAAGACAA 33008307
Query 205 TTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATC 264
|||||| | || |||||||| | |||| ||| | ||||| ||||| || |||||| |||
Sbjct 33008306 TTATCCGTATGAAAACTTTTCCGACACCCCTAACTTCAAAATTCGAAGGGCTAAAGAATC 33008247
Query 265 GATAGGCCACACTTTCA 281
| | | ||| ||||||
Sbjct 33008246 GTCAAGTCACGCTTTCA 33008230
>seq4256
Length=20900
Score = 95.1 bits (104), Expect = 2e-17
Identities = 83/102 (81%), Gaps = 1/102 (1%)
Strand=Plus/Plus
Query 193 GCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAA-TTTCGAG 251
||||||||||||||||||||||||||||||||||| ||||||| | | ||| | || |
Sbjct 3 GCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTGATTGAAACTCTCAAT 62
Query 252 GGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293
| |||||||||||||||| | ||||| ||| ||||||
Sbjct 63 AATCAAAAGGATCGATAGGCCCCGCTTTCGCGGTCCGTATTC 104
>seq4503
Length=10536
Score = 77.0 bits (84), Expect = 6e-12
Identities = 62/74 (84%), Gaps = 1/74 (1%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59
|||| ||| | ||| | ||| |||| ||||||||||||||||||||||||||||||
Sbjct 10463 TACTGAGCAGGATTTCTTTTGCAACGACAAGTCATCAGTAGGGTAAAACTAACCTGTCTC 10522
Query 60 ATGACGGTCTAAAC 73
| ||||||||||||
Sbjct 10523 ACGACGGTCTAAAC 10536
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854358766656
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |