Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq1 196 9e-48 seq4825 183 6e-44 seq2 141 2e-31 seq3 116 7e-24 seq4 109 1e-21 seq4826 107 4e-21 seq1670 107 4e-21 seq7 107 4e-21 >seq1 Length=51465339 Score = 196 bits (216), Expect = 9e-48 Identities = 183/230 (80%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 16910567 GGGACAGTCTCAGGTCGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 16910508 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||||| |||||| ||| ||| | ||| | | |||||||||||| ||||| Sbjct 16910507 GTGCAAAGATTTCCTCAGGCCGGACGGAGAAT-TGCCCTCGAGTGCAAAGGCAGAAGGGA 16910449 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| ||| Sbjct 16910448 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGG 16910389 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 16910388 TGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 16910339 >seq4825 Length=155848 Score = 183 bits (202), Expect = 6e-44 Identities = 180/230 (78%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 107123 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 107182 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | |||| | ||| ||| | || | | |||||||||||| ||||| Sbjct 107183 GTGCAAAGGTTTCCTCGGGCCGGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 107241 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| ||| Sbjct 107242 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGG 107301 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 107302 TGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 107351 Score = 183 bits (202), Expect = 6e-44 Identities = 180/230 (78%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 132918 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 132859 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | |||| | ||| ||| | || | | |||||||||||| ||||| Sbjct 132858 GTGCAAAGGTTTCCTCGGGCCGGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 132800 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| ||| Sbjct 132799 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGG 132740 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 132739 TGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 132690 >seq2 Length=43913520 Score = 141 bits (156), Expect = 2e-31 Identities = 160/212 (75%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| |||||| |||||||||| ||||||||||| Sbjct 18506649 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCATAGGCCTCCCAAAAGGTAACGGAGGC 18506590 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACA-GTGCAAAGGCAAAAGGGT 229 | ||||| |||| | ||| || | || | || ||||||||||| |||| Sbjct 18506589 GTGCAAAGGATTCCTCGGGCCGGACAGAGATTG-GCCCTCAAGTGCAAAGGCAGAAGGAA 18506531 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | |||| | || |||||||||||||||||| |||| ||||||| ||| Sbjct 18506530 GCTTGACTGCAAGACCCACCCGTTGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGG 18506471 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATA 321 ||| || ||||| ||||||||||| ||||||| Sbjct 18506470 TGCCGAGTGGAAGGGCCGTCGCTCAACGGATA 18506439 >seq3 Length=50312079 Score = 116 bits (128), Expect = 7e-24 Identities = 136/180 (76%), Gaps = 3/180 (2%) Strand=Plus/Minus Query 161 TAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAG 219 ||||||||||| ||||||| |||||| ||| || | | || | | ||||||||| Sbjct 1672089 TAACGGAGGCGTGCAAAGATTTCCTCAGACCGGACTGAGATCG-GCCCTCGAGTGCAAAG 1672031 Query 220 GCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAAT 279 ||| || || | |||||||| | ||| || | || |||||||| ||||||||| |||| | Sbjct 1672030 GCAGAAAGGAGCTTGACTGCAAGACCATCCA-TCGAGCAGGGAAGAAAGTCGGCCTTAGT 1671972 Query 280 GATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 |||||| ||| | ||||| || || ||| ||| ||| |||||| ||| || |||||| Sbjct 1671971 GATCCGACGGCACCGAATGAAAGAGCAGTCACTCAACGAATAAAATTTACTCTAGGGATA 1671912 >seq4 Length=35924511 Score = 109 bits (120), Expect = 1e-21 Identities = 162/222 (73%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 107 TGACGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCA-AAGAGTAACG 165 ||| |||||||| ||||| | |||||| || |||| |||||||| |||| ||| Sbjct 9199523 TGAAGGGACAGTCTCAGTTAGACAGTTTCTATGAGGCGTAGGCCTCCCAGAAGA-TAATA 9199581 Query 166 GAGGCGCCCAAAGATACCCTC-AGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAA 223 |||||| |||| || |||| ||| ||| ||| | || | | |||||||||||| Sbjct 9199582 GAGGCGTGCAAATATTTCCTCGAGCA-GGACGGAGATTG-GCCCTCGAGTGCAAAGGCAT 9199639 Query 224 AAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATC 283 ||| | | || | ||| | || | ||| |||| | ||||||||||| |||| ||||| Sbjct 9199640 AAGAGAGCTTAATTGCAAGACTCATCCGTCGAGCACGAACGAAAGTCGGCCTTAGTGATC 9199699 Query 284 CGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAG 325 || | ||| || ||||| | |||||||| ||||||||||| Sbjct 9199700 CGACTGTGTCGAGTGGAAGGATCGTCGCTCAACGGATAAAAG 9199741 >seq4826 Length=244980 Score = 107 bits (118), Expect = 4e-21 Identities = 163/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169 ||||||| || || ||| ||||| ||||||||| |||||| ||||||||||||||| Sbjct 87922 CGGGACACTGCGAGGTGGGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGG 87863 Query 170 CGCCCAAAGATACCCTCA-GCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGG 228 | | ||| || |||| ||| ||| | || || | || || | ||| Sbjct 87862 TGTGCGAAGGTAGGCTCAAGCTAAGATTCTGCTCGTGAGC-----GTAATGGTATAAGCC 87808 Query 229 TGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCG 288 || |||||| || ||| | ||| | ||| |||||||||||| | || |||||||| Sbjct 87807 TGCCTGACTGTGAGACCGACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGGA 87748 Query 289 GTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 || | | ||||| ||| |||||| |||||| |||| ||| | ||||||| Sbjct 87747 GTCCCGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATA 87697 >seq1670 Length=24701 Score = 107 bits (118), Expect = 4e-21 Identities = 163/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169 ||||||| || || ||| ||||| ||||||||| |||||| ||||||||||||||| Sbjct 23180 CGGGACACTGCGAGGTGGGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGG 23239 Query 170 CGCCCAAAGATACCCTCA-GCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGG 228 | | ||| || |||| ||| ||| | || || | || || | ||| Sbjct 23240 TGTGCGAAGGTAGGCTCAAGCTAAGATTCTGCTCGTGAGC-----GTAATGGTATAAGCC 23294 Query 229 TGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCG 288 || |||||| || ||| | ||| | ||| |||||||||||| | || |||||||| Sbjct 23295 TGCCTGACTGTGAGACCGACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGGA 23354 Query 289 GTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 || | | ||||| ||| |||||| |||||| |||| ||| | ||||||| Sbjct 23355 GTCCCGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATA 23405 >seq7 Length=36358036 Score = 107 bits (118), Expect = 4e-21 Identities = 163/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169 ||||||| || || ||| ||||| ||||||||| |||||| ||||||||||||||| Sbjct 11508304 CGGGACACTGCGAGGTGGGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGG 11508363 Query 170 CGCCCAAAGATACCCTCA-GCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGG 228 | | ||| || |||| ||| ||| | || || | || || | ||| Sbjct 11508364 TGTGCGAAGGTAGGCTCAAGCTAAGATTCTGCTCGTG-----AGGGTAATGGTATAAGCC 11508418 Query 229 TGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCG 288 || |||||| || ||| | ||| | ||| |||||||||||| | || |||||||| Sbjct 11508419 TGCCTGACTGTGAGACCGACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGGA 11508478 Query 289 GTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 || | | ||||| ||| |||||| |||||| |||| ||| | ||||||| Sbjct 11508479 GTCCCGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATA 11508529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982352589376