Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20
2016-05-24] 4,826 sequences; 421,502,825 total letters
Query= AAMG01001083.1
Length=339
Score E
Sequences producing significant alignments: (Bits) Value
seq1 196 9e-48
seq4825 183 6e-44
seq2 141 2e-31
seq3 116 7e-24
seq4 109 1e-21
seq4826 107 4e-21
seq1670 107 4e-21
seq7 107 4e-21
>seq1
Length=51465339
Score = 196 bits (216), Expect = 9e-48
Identities = 183/230 (80%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170
|||||||| |||| | |||||| ||||||| |||||||||| |||||||||||
Sbjct 16910567 GGGACAGTCTCAGGTCGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 16910508
Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229
| ||||||| |||||| ||| ||| | ||| | | |||||||||||| |||||
Sbjct 16910507 GTGCAAAGATTTCCTCAGGCCGGACGGAGAAT-TGCCCTCGAGTGCAAAGGCAGAAGGGA 16910449
Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289
| |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| |||
Sbjct 16910448 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGG 16910389
Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
||| || ||||| ||||||||||| ||||||||||| ||| || ||||||
Sbjct 16910388 TGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 16910339
>seq4825
Length=155848
Score = 183 bits (202), Expect = 6e-44
Identities = 180/230 (78%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170
|||||||| |||| | |||||| ||||||| |||||||||| |||||||||||
Sbjct 107123 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 107182
Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229
| ||||| | |||| | ||| ||| | || | | |||||||||||| |||||
Sbjct 107183 GTGCAAAGGTTTCCTCGGGCCGGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 107241
Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289
| |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| |||
Sbjct 107242 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGG 107301
Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
||| || ||||| ||||||||||| ||||||||||| ||| || ||||||
Sbjct 107302 TGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 107351
Score = 183 bits (202), Expect = 6e-44
Identities = 180/230 (78%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170
|||||||| |||| | |||||| ||||||| |||||||||| |||||||||||
Sbjct 132918 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 132859
Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229
| ||||| | |||| | ||| ||| | || | | |||||||||||| |||||
Sbjct 132858 GTGCAAAGGTTTCCTCGGGCCGGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 132800
Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289
| |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| |||
Sbjct 132799 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGG 132740
Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
||| || ||||| ||||||||||| ||||||||||| ||| || ||||||
Sbjct 132739 TGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 132690
>seq2
Length=43913520
Score = 141 bits (156), Expect = 2e-31
Identities = 160/212 (75%), Gaps = 2/212 (1%)
Strand=Plus/Minus
Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170
|||||||| |||| | |||||| |||||| |||||||||| |||||||||||
Sbjct 18506649 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCATAGGCCTCCCAAAAGGTAACGGAGGC 18506590
Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACA-GTGCAAAGGCAAAAGGGT 229
| ||||| |||| | ||| || | || | || ||||||||||| ||||
Sbjct 18506589 GTGCAAAGGATTCCTCGGGCCGGACAGAGATTG-GCCCTCAAGTGCAAAGGCAGAAGGAA 18506531
Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289
| |||||||| | |||| | || |||||||||||||||||| |||| ||||||| |||
Sbjct 18506530 GCTTGACTGCAAGACCCACCCGTTGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGG 18506471
Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATA 321
||| || ||||| ||||||||||| |||||||
Sbjct 18506470 TGCCGAGTGGAAGGGCCGTCGCTCAACGGATA 18506439
>seq3
Length=50312079
Score = 116 bits (128), Expect = 7e-24
Identities = 136/180 (76%), Gaps = 3/180 (2%)
Strand=Plus/Minus
Query 161 TAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAG 219
||||||||||| ||||||| |||||| ||| || | | || | | |||||||||
Sbjct 1672089 TAACGGAGGCGTGCAAAGATTTCCTCAGACCGGACTGAGATCG-GCCCTCGAGTGCAAAG 1672031
Query 220 GCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAAT 279
||| || || | |||||||| | ||| || | || |||||||| ||||||||| |||| |
Sbjct 1672030 GCAGAAAGGAGCTTGACTGCAAGACCATCCA-TCGAGCAGGGAAGAAAGTCGGCCTTAGT 1671972
Query 280 GATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
|||||| ||| | ||||| || || ||| ||| ||| |||||| ||| || ||||||
Sbjct 1671971 GATCCGACGGCACCGAATGAAAGAGCAGTCACTCAACGAATAAAATTTACTCTAGGGATA 1671912
>seq4
Length=35924511
Score = 109 bits (120), Expect = 1e-21
Identities = 162/222 (73%), Gaps = 6/222 (3%)
Strand=Plus/Plus
Query 107 TGACGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCA-AAGAGTAACG 165
||| |||||||| ||||| | |||||| || |||| |||||||| |||| |||
Sbjct 9199523 TGAAGGGACAGTCTCAGTTAGACAGTTTCTATGAGGCGTAGGCCTCCCAGAAGA-TAATA 9199581
Query 166 GAGGCGCCCAAAGATACCCTC-AGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAA 223
|||||| |||| || |||| ||| ||| ||| | || | | ||||||||||||
Sbjct 9199582 GAGGCGTGCAAATATTTCCTCGAGCA-GGACGGAGATTG-GCCCTCGAGTGCAAAGGCAT 9199639
Query 224 AAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATC 283
||| | | || | ||| | || | ||| |||| | ||||||||||| |||| |||||
Sbjct 9199640 AAGAGAGCTTAATTGCAAGACTCATCCGTCGAGCACGAACGAAAGTCGGCCTTAGTGATC 9199699
Query 284 CGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAG 325
|| | ||| || ||||| | |||||||| |||||||||||
Sbjct 9199700 CGACTGTGTCGAGTGGAAGGATCGTCGCTCAACGGATAAAAG 9199741
>seq4826
Length=244980
Score = 107 bits (118), Expect = 4e-21
Identities = 163/231 (71%), Gaps = 6/231 (3%)
Strand=Plus/Minus
Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169
||||||| || || ||| ||||| ||||||||| |||||| |||||||||||||||
Sbjct 87922 CGGGACACTGCGAGGTGGGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGG 87863
Query 170 CGCCCAAAGATACCCTCA-GCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGG 228
| | ||| || |||| ||| ||| | || || | || || | |||
Sbjct 87862 TGTGCGAAGGTAGGCTCAAGCTAAGATTCTGCTCGTGAGC-----GTAATGGTATAAGCC 87808
Query 229 TGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCG 288
|| |||||| || ||| | ||| | ||| |||||||||||| | || ||||||||
Sbjct 87807 TGCCTGACTGTGAGACCGACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGGA 87748
Query 289 GTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
|| | | ||||| ||| |||||| |||||| |||| ||| | |||||||
Sbjct 87747 GTCCCGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATA 87697
>seq1670
Length=24701
Score = 107 bits (118), Expect = 4e-21
Identities = 163/231 (71%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169
||||||| || || ||| ||||| ||||||||| |||||| |||||||||||||||
Sbjct 23180 CGGGACACTGCGAGGTGGGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGG 23239
Query 170 CGCCCAAAGATACCCTCA-GCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGG 228
| | ||| || |||| ||| ||| | || || | || || | |||
Sbjct 23240 TGTGCGAAGGTAGGCTCAAGCTAAGATTCTGCTCGTGAGC-----GTAATGGTATAAGCC 23294
Query 229 TGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCG 288
|| |||||| || ||| | ||| | ||| |||||||||||| | || ||||||||
Sbjct 23295 TGCCTGACTGTGAGACCGACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGGA 23354
Query 289 GTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
|| | | ||||| ||| |||||| |||||| |||| ||| | |||||||
Sbjct 23355 GTCCCGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATA 23405
>seq7
Length=36358036
Score = 107 bits (118), Expect = 4e-21
Identities = 163/231 (71%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169
||||||| || || ||| ||||| ||||||||| |||||| |||||||||||||||
Sbjct 11508304 CGGGACACTGCGAGGTGGGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGG 11508363
Query 170 CGCCCAAAGATACCCTCA-GCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGG 228
| | ||| || |||| ||| ||| | || || | || || | |||
Sbjct 11508364 TGTGCGAAGGTAGGCTCAAGCTAAGATTCTGCTCGTG-----AGGGTAATGGTATAAGCC 11508418
Query 229 TGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCG 288
|| |||||| || ||| | ||| | ||| |||||||||||| | || ||||||||
Sbjct 11508419 TGCCTGACTGTGAGACCGACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGGA 11508478
Query 289 GTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
|| | | ||||| ||| |||||| |||||| |||| ||| | |||||||
Sbjct 11508479 GTCCCGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATA 11508529
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 982352589376
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