Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20
2016-05-24] 4,826 sequences; 421,502,825 total letters
Query= AAMG01001138.1
Length=202
Score E
Sequences producing significant alignments: (Bits) Value
seq1 113 5e-23
seq4826 107 2e-21
seq4825 107 2e-21
seq1670 107 2e-21
seq7 107 2e-21
seq5 96.9 4e-18
seq6 84.2 2e-14
>seq1
Length=51465339
Score = 113 bits (124), Expect = 5e-23
Identities = 114/150 (76%), Gaps = 2/150 (1%)
Strand=Plus/Plus
Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84
|||||||| |||| || |||| || |||||||||| || | ||||||||| |||
Sbjct 16930764 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCAATTTCACCGAG 16930823
Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143
| | | | ||||||| ||| || ||||||| ||||||||||||||||
Sbjct 16930824 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 16930882
Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173
||||||||||||||||||||||||||||||
Sbjct 16930883 ACAAGGAATTTCGCTACCTTAGGACCGTTA 16930912
Score = 102 bits (112), Expect = 9e-20
Identities = 101/132 (77%), Gaps = 2/132 (2%)
Strand=Plus/Plus
Query 43 GCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAGCTCACGGTT-GAGACAGN 101
|| |||| || |||||||||| || | | ||||||| |||| | | | |||||||
Sbjct 43971812 GCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAGC-CTCTCTCCGAGACAGT 43971870
Query 102 NNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 161
||| || ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 43971871 GCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 43971930
Query 162 TTAGGACCGTTA 173
||||||||||||
Sbjct 43971931 TTAGGACCGTTA 43971942
Score = 98.7 bits (108), Expect = 1e-18
Identities = 100/132 (76%), Gaps = 2/132 (2%)
Strand=Plus/Plus
Query 43 GCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAGCTCACGGTT-GAGACAGN 101
|| |||| || |||||||||| || | | ||||||| |||| | | | |||||||
Sbjct 43973147 GCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAGC-CTCTCTCCGAGACAGT 43973205
Query 102 NNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 161
||| || ||||||| |||||||||||||||||||||||||||||||| |
Sbjct 43973206 GCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTATC 43973265
Query 162 TTAGGACCGTTA 173
||||||||||||
Sbjct 43973266 TTAGGACCGTTA 43973277
Score = 82.4 bits (90), Expect = 8e-14
Identities = 108/150 (72%), Gaps = 3/150 (2%)
Strand=Plus/Plus
Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84
|||||||| |||| || |||| ||||||||||||| || | ||||||||| |||
Sbjct 16910727 GGGTCTTTCTGTCCAGGTGCAGGTAGTCGGCATCTTCACAGACATGTCAATTTCACCGAG 16910786
Query 85 -CTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143
||| | ||||||| ||| || |||||| ||| |||||||||||
Sbjct 16910787 CCTCTC-TCCGAGACAGTGCCTAGATCGTTACGCCTTTCGTGTGGGTTGGAACTTACCC- 16910844
Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173
||||||||||| ||||||||| ||| |||
Sbjct 16910845 ACAAGGAATTTAGCTACCTTATAACCATTA 16910874
>seq4826
Length=244980
Score = 107 bits (118), Expect = 2e-21
Identities = 112/151 (74%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82
||||||||| |||| || |||| || |||||||||| || | | ||||||||| |
Sbjct 88066 CGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCG 88125
Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142
| || | ||||||| |||||||||||||||||||| ||||| |
Sbjct 88126 GGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGC 88185
Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173
|||||||||||||||||||||||||| ||||
Sbjct 88186 GACAAGGAATTTCGCTACCTTAGGACAGTTA 88216
>seq4825
Length=155848
Score = 107 bits (118), Expect = 2e-21
Identities = 113/150 (75%), Gaps = 2/150 (1%)
Strand=Plus/Minus
Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84
|||||||| |||| || |||| || |||||||||| || | | ||||||| |||
Sbjct 106963 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 106904
Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143
| | | | ||||||| ||| || ||||||| ||||||||||||||||
Sbjct 106903 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 106845
Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173
||||||||||||||||||||||||||||||
Sbjct 106844 ACAAGGAATTTCGCTACCTTAGGACCGTTA 106815
Score = 107 bits (118), Expect = 2e-21
Identities = 113/150 (75%), Gaps = 2/150 (1%)
Strand=Plus/Plus
Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84
|||||||| |||| || |||| || |||||||||| || | | ||||||| |||
Sbjct 133078 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 133137
Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143
| | | | ||||||| ||| || ||||||| ||||||||||||||||
Sbjct 133138 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 133196
Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173
||||||||||||||||||||||||||||||
Sbjct 133197 ACAAGGAATTTCGCTACCTTAGGACCGTTA 133226
>seq1670
Length=24701
Score = 107 bits (118), Expect = 2e-21
Identities = 112/151 (74%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82
||||||||| |||| || |||| || |||||||||| || | | ||||||||| |
Sbjct 23036 CGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCG 22977
Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142
| || | ||||||| |||||||||||||||||||| ||||| |
Sbjct 22976 GGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGC 22917
Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173
|||||||||||||||||||||||||| ||||
Sbjct 22916 GACAAGGAATTTCGCTACCTTAGGACAGTTA 22886
>seq7
Length=36358036
Score = 107 bits (118), Expect = 2e-21
Identities = 112/151 (74%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82
||||||||| |||| || |||| || |||||||||| || | | ||||||||| |
Sbjct 11508160 CGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCG 11508101
Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142
| || | ||||||| |||||||||||||||||||| ||||| |
Sbjct 11508100 GGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGC 11508041
Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173
|||||||||||||||||||||||||| ||||
Sbjct 11508040 GACAAGGAATTTCGCTACCTTAGGACAGTTA 11508010
>seq5
Length=41956025
Score = 96.9 bits (106), Expect = 4e-18
Identities = 58/61 (95%), Gaps = 0/61 (0%)
Strand=Plus/Plus
Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172
||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 30122975 TACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 30123034
Query 173 A 173
|
Sbjct 30123035 A 30123035
>seq6
Length=36610139
Score = 84.2 bits (92), Expect = 2e-14
Identities = 55/61 (90%), Gaps = 0/61 (0%)
Strand=Plus/Plus
Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172
||| || ||| ||| |||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 19499380 TACGCCTTTCATGCGGGTCGGTACTTACCCGACAAGGAAATTCGCTACCTTAGGACCGTT 19499439
Query 173 A 173
|
Sbjct 19499440 A 19499440
Score = 84.2 bits (92), Expect = 2e-14
Identities = 55/61 (90%), Gaps = 0/61 (0%)
Strand=Plus/Plus
Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172
||| || ||| ||| |||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 19503345 TACGCCTTTCATGCGGGTCGGTACTTACCCGACAAGGAAATTCGCTACCTTAGGACCGTT 19503404
Query 173 A 173
|
Sbjct 19503405 A 19503405
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547174417374
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |