Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq4825 226 6e-57 seq2194 226 6e-57 seq5 226 6e-57 seq1 226 6e-57 seq4826 203 7e-50 seq9 152 1e-34 seq21 125 2e-26 seq7 77.0 7e-12 seq4 77.0 7e-12 >seq4825 Length=155848 Score = 226 bits (250), Expect = 6e-57 Identities = 240/310 (77%), Gaps = 20/310 (6%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 101375 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 101317 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| | Sbjct 101316 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 101257 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC-CTAGGCTCA 207 || |||| |||||||||| ||| ||| ||||||||||||||||||| ||| | || | | Sbjct 101256 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCT 101197 Query 208 TCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAG 267 || || ||| || ||| |||| | | | | | || | |||||||| Sbjct 101196 CCT-----CG---GGC-----GGATTCCTCCTTTTGCTCCTCAG-CCTACGGGGTATTAG 101151 Query 268 CGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACCC 325 | |||||||| ||| | ||| || ||| ||||| ||| || || |||||||||| Sbjct 101150 CAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAAGGGCAGGTTCTTACGCGTTACTCACCC 101093 Query 326 GTCCGCCGCT 335 ||||||| || Sbjct 101092 GTCCGCCACT 101083 Score = 226 bits (250), Expect = 6e-57 Identities = 240/310 (77%), Gaps = 20/310 (6%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 138666 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 138724 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| | Sbjct 138725 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 138784 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC-CTAGGCTCA 207 || |||| |||||||||| ||| ||| ||||||||||||||||||| ||| | || | | Sbjct 138785 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCT 138844 Query 208 TCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAG 267 || || ||| || ||| |||| | | | | | || | |||||||| Sbjct 138845 CCT-----CG---GGC-----GGATTCCTCCTTTTGCTCCTCAG-CCTACGGGGTATTAG 138890 Query 268 CGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACCC 325 | |||||||| ||| | ||| || ||| ||||| ||| || || |||||||||| Sbjct 138891 CAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAAGGGCAGGTTCTTACGCGTTACTCACCC 138948 Query 326 GTCCGCCGCT 335 ||||||| || Sbjct 138949 GTCCGCCACT 138958 >seq2194 Length=21910 Score = 226 bits (250), Expect = 6e-57 Identities = 240/310 (77%), Gaps = 20/310 (6%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 17658 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 17600 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| | Sbjct 17599 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 17540 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC-CTAGGCTCA 207 || |||| |||||||||| ||| ||| ||||||||||||||||||| ||| | || | | Sbjct 17539 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCT 17480 Query 208 TCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAG 267 || || ||| || ||| |||| | | | | | || | |||||||| Sbjct 17479 CCT-----CG---GGC-----GGATTCCTCCTTTTGCTCCTCAG-CCTACGGGGTATTAG 17434 Query 268 CGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACCC 325 | |||||||| ||| | ||| || ||| ||||| ||| || || |||||||||| Sbjct 17433 CAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAAGGGCAGGTTCTTACGCGTTACTCACCC 17376 Query 326 GTCCGCCGCT 335 ||||||| || Sbjct 17375 GTCCGCCACT 17366 >seq5 Length=41956025 Score = 226 bits (250), Expect = 6e-57 Identities = 240/310 (77%), Gaps = 20/310 (6%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 32787869 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 32787927 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| | Sbjct 32787928 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 32787987 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC-CTAGGCTCA 207 || |||| |||||||||| ||| ||| ||||||||||||||||||| ||| | || | | Sbjct 32787988 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCT 32788047 Query 208 TCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAG 267 || || ||| || ||| |||| | | | | | || | |||||||| Sbjct 32788048 CCT-----CG---GGC-----GGATTCCTCCTTTTGCTCCTCAG-CCTACGGGGTATTAG 32788093 Query 268 CGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACCC 325 | |||||||| ||| | ||| || ||| ||||| ||| || || |||||||||| Sbjct 32788094 CAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAAGGGCAGGTTCTTACGCGTTACTCACCC 32788151 Query 326 GTCCGCCGCT 335 ||||||| || Sbjct 32788152 GTCCGCCACT 32788161 Score = 187 bits (206), Expect = 5e-45 Identities = 133/153 (87%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 46 ATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACC 105 || |||||||||||||||| ||||||||||||||||||||||||||||||||| | || Sbjct 13617424 ATTAGGCTTTCGCCCATTGCGGAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTTGGCC 13617483 Query 106 GTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGG 165 ||||||||| |||||||| |||||||||||||| |||||| || |||| ||||||||| Sbjct 13617484 ATGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTATTGATCATCGCCTTGG 13617543 Query 166 TGAGCCATTACCTCACCAACTAGCTAATCCGAC 198 | ||| || | |||||||||||| ||||| ||| Sbjct 13617544 TAAGCTATCATCTCACCAACTAGATAATCAGAC 13617576 >seq1 Length=51465339 Score = 226 bits (250), Expect = 6e-57 Identities = 240/310 (77%), Gaps = 20/310 (6%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 12124135 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 12124193 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| | Sbjct 12124194 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 12124253 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC-CTAGGCTCA 207 || |||| |||||||||| ||| ||| ||||||||||||||||||| ||| | || | | Sbjct 12124254 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCT 12124313 Query 208 TCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAG 267 || || ||| || ||| |||| | | | | | || | |||||||| Sbjct 12124314 CCT-----CG---GGC-----GGATTCCTCCTTTTGCTCCTCAG-CCTACGGGGTATTAG 12124359 Query 268 CGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACCC 325 | |||||||| ||| | ||| || ||| ||||| ||| || || |||||||||| Sbjct 12124360 CAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAAGGGCAGGTTCTTACGCGTTACTCACCC 12124417 Query 326 GTCCGCCGCT 335 ||||||| || Sbjct 12124418 GTCCGCCACT 12124427 Score = 226 bits (250), Expect = 6e-57 Identities = 240/310 (77%), Gaps = 20/310 (6%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 16944868 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 16944810 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| | Sbjct 16944809 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 16944750 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC-CTAGGCTCA 207 || |||| |||||||||| ||| ||| ||||||||||||||||||| ||| | || | | Sbjct 16944749 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCT 16944690 Query 208 TCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAG 267 || || ||| || ||| |||| | | | | | || | |||||||| Sbjct 16944689 CCT-----CG---GGC-----GGATTCCTCCTTTTGCTCCTCAG-CCTACGGGGTATTAG 16944644 Query 268 CGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACCC 325 | |||||||| ||| | ||| || ||| ||||| ||| || || |||||||||| Sbjct 16944643 CAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAAGGGCAGGTTCTTACGCGTTACTCACCC 16944586 Query 326 GTCCGCCGCT 335 ||||||| || Sbjct 16944585 GTCCGCCACT 16944576 Score = 158 bits (174), Expect = 3e-36 Identities = 111/127 (87%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 65 TCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTG 124 || || ||||||||||||||||||| |||||||| ||| |||||||||||| |||||||| Sbjct 14945125 TCAAAAATTCCCCACTGCTGCCTCCTGTAGGAGTTTGGGCCGTGTCTCAGTCCCAGTGTG 14945066 Query 125 ACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAA 184 ||||||| |||||| |||||| ||| |||| |||||||||| || ||| ||||||||| Sbjct 14945065 GCTGATCACCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGTTATTGCCTCACCAA 14945006 Query 185 CTAGCTA 191 ||||||| Sbjct 14945005 CTAGCTA 14944999 Score = 116 bits (128), Expect = 8e-24 Identities = 109/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 70 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGA 129 |||||||||||||||||||| || |||||| || |||||||| ||| |||||||| |||| Sbjct 43839198 TATTCCCCACTGCTGCCTCCTGTGGGAGTCCGGGCCGTGTCTTAGTCCCAGTGTGGCTGA 43839257 Query 130 TCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGC 189 | |||| ||||||| || | ||| | | |||||| || |||||| |||||||| Sbjct 43839258 TTATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGAATTTACCTGACCAACTACT 43839317 Query 190 TAATCCGACCTAGGCTCAT 208 |||| | | |||||||| Sbjct 43839318 TAATTCTATGCAGGCTCAT 43839336 >seq4826 Length=244980 Score = 203 bits (224), Expect = 7e-50 Identities = 179/220 (81%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58 |||||||| | | | | ||||||| ||| |||||| |||| ||||||| ||||||||| Sbjct 125853 CTTTACAAGCGGCATTGCCCTTCTT-CACTCACGCGATATTG-CTGGATCGGGCTTTCGC 125910 Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118 ||||||||||| |||||||||||||||| ||||| |||||| || |||||||||||| || Sbjct 125911 CCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCC 125970 Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178 |||||| |||||| ||| ||||||| || | ||| | | |||||| |||| |||||| Sbjct 125971 AGTGTGGCTGATCGTCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCT 126030 Query 179 CACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGC 218 |||||||| ||||| | || ||||||||| | ||||| Sbjct 126031 GACCAACTACCTAATACTACGCAGGCTCATCAAACAGCGC 126070 >seq9 Length=33682890 Score = 152 bits (168), Expect = 1e-34 Identities = 119/140 (85%), Gaps = 3/140 (2%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATAT--TCCCCACTGCTGCC 86 |||||||||||| || |||||||||||||||||| || || ||||| ||| |||| Sbjct 3431053 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATCCTCCCCCCTGTTGCC 3431111 Query 87 TCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAG 146 |||| ||||||||||| |||||||||||| |||||||| ||||||||| |||| |||||| Sbjct 3431112 TCCCTTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCTTCTCGGACCAG 3431171 Query 147 TTACGGATCGTCGCCTTGGT 166 ||| |||| |||||||||| Sbjct 3431172 CTACTGATCATCGCCTTGGT 3431191 Score = 91.5 bits (100), Expect = 3e-16 Identities = 147/206 (71%), Gaps = 19/206 (9%) Strand=Plus/Plus Query 133 TCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAA 192 ||||||| |||||| ||| |||| |||||||||| ||| ||| ||||||||||||||||| Sbjct 15407802 TCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAA 15407861 Query 193 TCCGAC-CTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGG 251 || ||| | || | | || || ||| || ||| |||| | | | | Sbjct 15407862 TCAGACGCGAGCCCCTCCT-----CG---GGC-----GGATTCCTCCTTTTGCTCCTCAG 15407908 Query 252 ACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCC 309 | || | ||||||||| |||||||| ||| | ||| || ||| ||||| ||| Sbjct 15407909 -CCTACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAAGGGCAGGTTCT 15407965 Query 310 TAGGCATTACTCACCCGTCCGCCGCT 335 || || ||||||||||||||||| || Sbjct 15407966 TACGCGTTACTCACCCGTCCGCCACT 15407991 Score = 73.4 bits (80), Expect = 8e-11 Identities = 51/58 (88%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 86 CTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGAC 143 |||||||||||||| || || ||||||||| | |||||| |||||||||||||| ||| Sbjct 31794872 CTCCCGTAGGAGTCCGGGCCATGTCTCAGTCCTAGTGTGGCTGATCATCCTCTCGGAC 31794929 >seq21 Length=514035 Score = 125 bits (138), Expect = 2e-26 Identities = 86/96 (90%), Gaps = 1/96 (1%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||| ||||||| || ||||||||||||||||||| || |||||||||||||||||| Sbjct 480343 CACGTGGCATTG-CTCCATCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 480285 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTG 124 |||||||||||||| |||||||||||| |||||||| Sbjct 480284 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTG 480249 >seq7 Length=36358036 Score = 77.0 bits (84), Expect = 7e-12 Identities = 59/69 (86%), Gaps = 1/69 (1%) Strand=Plus/Plus Query 63 TGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 122 ||||||| ||| |||||||||||| ||||| |||||| || |||||||| ||| | |||| Sbjct 14910845 TGTCCAACATTGCCCACTGCTGCCCCCCGTGGGAGTCAGG-CCGTGTCTTAGTCCGAGTG 14910903 Query 123 TGACTGATC 131 || |||||| Sbjct 14910904 TGGCTGATC 14910912 >seq4 Length=35924511 Score = 77.0 bits (84), Expect = 7e-12 Identities = 74/94 (79%), Gaps = 1/94 (1%) Strand=Plus/Plus Query 100 TGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCG 159 ||| |||||||| || ||| |||| ||||||||||| || | | || || |||| ||| Sbjct 9947170 TGGGCCGTGTCTTAGC-CCATTGTGGCTGATCATCCTTTCGGGCTAGCTATTGATCATCG 9947228 Query 160 CCTTGGTGAGCCATTACCTCACCAACTAGCTAAT 193 ||| |||| ||| |||||||||||||||||| Sbjct 9947229 TCTTATTGAGTTATTGCCTCACCAACTAGCTAAT 9947262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071948265280