Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20
2016-05-24] 4,826 sequences; 421,502,825 total letters
Query= AAMG01001291.1
Length=420
Score E
Sequences producing significant alignments: (Bits) Value
seq4825 217 4e-54
seq11 199 1e-48
seq1 196 1e-47
seq4826 102 2e-19
seq1670 102 2e-19
seq7 102 2e-19
seq2 89.7 1e-15
seq4 87.8 4e-15
>seq4825
Length=155848
Score = 217 bits (240), Expect = 4e-54
Identities = 308/415 (74%), Gaps = 16/415 (4%)
Strand=Plus/Minus
Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68
||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| |
Sbjct 105669 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 105613
Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128
|||||| ||| || |||| ||| ||||||||| ||| | || |||||| || | ||
Sbjct 105612 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 105557
Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186
||| | |||||| |||||||||||| ||||||| |||| | ||| |||| |
Sbjct 105556 GACAATT-GCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 105499
Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGT 246
||||||| || |||||| | | |||| | ||| ||| |||| |||| | | |
Sbjct 105498 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAG--AGCCCCGG 105442
Query 247 GGGC-TCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGG 305
| | |||||||||||| || |||||||||| | ||||||||||||||| | ||||
Sbjct 105441 GCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG-GGGG 105383
Query 306 TTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCC 365
|||||||| || |||||||||||||||| ||| |||||||||| ||| |||||||||||
Sbjct 105382 TTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCC 105323
Query 366 TTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420
||| | | |||||| | ||||| || || | ||||| || | |||||||
Sbjct 105322 TTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 105268
Score = 217 bits (240), Expect = 4e-54
Identities = 308/415 (74%), Gaps = 16/415 (4%)
Strand=Plus/Plus
Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68
||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| |
Sbjct 134372 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 134428
Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128
|||||| ||| || |||| ||| ||||||||| ||| | || |||||| || | ||
Sbjct 134429 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 134484
Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186
||| | |||||| |||||||||||| ||||||| |||| | ||| |||| |
Sbjct 134485 GACAATT-GCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 134542
Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGT 246
||||||| || |||||| | | |||| | ||| ||| |||| |||| | | |
Sbjct 134543 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAG--AGCCCCGG 134599
Query 247 GGGC-TCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGG 305
| | |||||||||||| || |||||||||| | ||||||||||||||| | ||||
Sbjct 134600 GCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG-GGGG 134658
Query 306 TTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCC 365
|||||||| || |||||||||||||||| ||| |||||||||| ||| |||||||||||
Sbjct 134659 TTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCC 134718
Query 366 TTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420
||| | | |||||| | ||||| || || | ||||| || | |||||||
Sbjct 134719 TTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 134773
>seq11
Length=1570004
Score = 199 bits (220), Expect = 1e-48
Identities = 304/415 (73%), Gaps = 16/415 (4%)
Strand=Plus/Minus
Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68
||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| |
Sbjct 154915 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 154859
Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128
||| | ||| || ||| ||| ||||||||| ||| | || | |||| || | ||
Sbjct 154858 ACCTGAGCTT-CATCCTAGTCAT-GGATAGATCACCCAGGTT-CAGGTCCATAAGC-AGT 154803
Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186
||| | |||||| |||||||||||| ||||||| |||| | ||| |||| |
Sbjct 154802 GACAATT-GCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 154745
Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGT 246
||||||| || |||||| | | |||| | ||| ||| |||| |||| | | |
Sbjct 154744 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAG--AGCCCCGG 154688
Query 247 GGGC-TCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGG 305
| | |||||||||||| || |||||||||| | ||||||||||||||| | ||||
Sbjct 154687 GCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG-GGGG 154629
Query 306 TTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCC 365
|||||||| || |||||||||||||||| ||| |||||||||| ||| |||||||||||
Sbjct 154628 TTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCC 154569
Query 366 TTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420
||| | | |||||| | ||||| || || | ||||| || | |||||||
Sbjct 154568 TTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 154514
>seq1
Length=51465339
Score = 196 bits (216), Expect = 1e-47
Identities = 303/415 (73%), Gaps = 16/415 (4%)
Strand=Plus/Plus
Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68
||||| |||| ||||| | || |||||| |||| |||||| |||||| ||||| |
Sbjct 16932069 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCAGTTCGGACCTCCACTTAGTT-TC 16932125
Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128
|||||| ||| || |||| ||| ||||||||| ||| | || |||||| || | ||
Sbjct 16932126 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 16932181
Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186
||| | |||||| |||||||||||| ||||||| |||| | ||| |||| |
Sbjct 16932182 GACAATT-GCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 16932239
Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGT 246
||||||| || |||||| | | |||| | ||| ||| |||| || | | | |
Sbjct 16932240 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTTAG--AGCCCCGG 16932296
Query 247 GGGC-TCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGG 305
| | |||||||||||| || || ||||||| | |||||||||||||| | ||||
Sbjct 16932297 GCTCCTCCCACTGCTTGGGAGCTTATGGTTTCATGTTCTATTTCACTCCCTGATG-GGGG 16932355
Query 306 TTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCC 365
|||||||| || |||||||||||||||| ||| |||||||||| || |||||||||||
Sbjct 16932356 TTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAAGAGTATTTAGCC 16932415
Query 366 TTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420
||| | | |||||| | ||||| || || | ||||| || | |||||||
Sbjct 16932416 TTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 16932470
>seq4826
Length=244980
Score = 102 bits (112), Expect = 2e-19
Identities = 102/130 (78%), Gaps = 3/130 (2%)
Strand=Plus/Plus
Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCTTTT 312
|||| |||| ||||| | | ||||| ||| ||| ||||||| | ||||||||||
Sbjct 89657 ACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCC-TAAATAGGGTTCTTTT 89715
Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372
| |||||||||||||||||| || | |||||||||| | || | || |||| ||| ||||
Sbjct 89716 CACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTAGAGG 89775
Query 373 ATGGTCCCCC 382
|||||||||
Sbjct 89776 GTGGTCCCCC 89785
>seq1670
Length=24701
Score = 102 bits (112), Expect = 2e-19
Identities = 102/130 (78%), Gaps = 3/130 (2%)
Strand=Plus/Minus
Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCTTTT 312
|||| |||| ||||| | | ||||| ||| ||| ||||||| | ||||||||||
Sbjct 21445 ACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCC-TAAATAGGGTTCTTTT 21387
Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372
| |||||||||||||||||| || | |||||||||| | || | || |||| ||| ||||
Sbjct 21386 CACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTAGAGG 21327
Query 373 ATGGTCCCCC 382
|||||||||
Sbjct 21326 GTGGTCCCCC 21317
>seq7
Length=36358036
Score = 102 bits (112), Expect = 2e-19
Identities = 102/130 (78%), Gaps = 3/130 (2%)
Strand=Plus/Minus
Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCTTTT 312
|||| |||| ||||| | | ||||| ||| ||| ||||||| | ||||||||||
Sbjct 11506569 ACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCC-TAAATAGGGTTCTTTT 11506511
Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372
| |||||||||||||||||| || | |||||||||| | || | || |||| ||| ||||
Sbjct 11506510 CACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTAGAGG 11506451
Query 373 ATGGTCCCCC 382
|||||||||
Sbjct 11506450 GTGGTCCCCC 11506441
>seq2
Length=43913520
Score = 89.7 bits (98), Expect = 1e-15
Identities = 123/171 (72%), Gaps = 1/171 (1%)
Strand=Plus/Minus
Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 309
||||||||||||| || ||| |||||| | ||||||||||||| | | | |||||
Sbjct 32861304 CTCCCACTGCTTGGGAGCTTACAGTTTCATGTTCTATTTCACTCCACAAT-GAGAGTTCT 32861246
Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGG 369
||| | |||||||||| |||| ||| ||||||||| |||| ||||||| ||||
Sbjct 32861245 TTTGACTCTTCCCTCACGATACTGCTTCGATATCGGTCACTCAGGCGTATTTAATCTTGC 32861186
Query 370 AGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420
|||| | | | ||||| || || | |||||||| | ||||||
Sbjct 32861185 CAGATGATTCTTGCCGATTCACACGGGATTCCACGTGCTCCATGTTACTCG 32861135
>seq4
Length=35924511
Score = 87.8 bits (96), Expect = 4e-15
Identities = 124/172 (72%), Gaps = 2/172 (1%)
Strand=Plus/Plus
Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTC- 308
||||||||||||| | |||||||||| | |||||||| |||||| | ||| |||
Sbjct 8840434 CTCCCACTGCTTGGGAGTTTACGGTTTCATGTTCTATTTCTCTCCCCAAT-AGGGTTTCT 8840492
Query 309 TTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTG 368
||||| | ||||||| |||||| ||| |||||| ||| ||| || || | |||||
Sbjct 8840493 TTTTCACACTTCCCTCTTTGTACTACTTCGCTATCGATCACCCAGGAGCATATTACCTTG 8840552
Query 369 GAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420
| | |||||| | ||||| || || | ||||| || | |||||||
Sbjct 8840553 AAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 8840604
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1241540080384
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