Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20
2016-05-24] 4,826 sequences; 421,502,825 total letters
Query= AAMG01001432.1
Length=344
Score E
Sequences producing significant alignments: (Bits) Value
seq4825 219 8e-55
seq2194 219 8e-55
seq5 219 8e-55
seq1 219 8e-55
seq4826 132 1e-28
seq9 127 4e-27
seq21 120 6e-25
seq4 96.9 7e-18
>seq4825
Length=155848
Score = 219 bits (242), Expect = 8e-55
Identities = 233/305 (76%), Gaps = 18/305 (6%)
Strand=Plus/Minus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | ||| | ||||| |||| ||||||| | || || |||||||||||||||||||||
Sbjct 101370 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 101311
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120
||||||||||||||||||||||||| |||||| | ||| |||||| | || ||||| |||
Sbjct 101310 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 101251
Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180
| ||| |||||| |||||| ||||||||||| |||||| | ||||||||| || |
Sbjct 101250 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTCGG 101191
Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239
|| ||| || || ||| ||||| | | || | |||||||||
Sbjct 101190 GCGGATTCCTCCTT------------TTGC--TCCTCAGCC--TACGGGGTATTAGCAGC 101147
Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299
|||||||| ||| |||| ||| || |||||||| || ||| ||||||||||||||||
Sbjct 101146 CGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTCCG 101088
Query 300 CCACT 304
|||||
Sbjct 101087 CCACT 101083
Score = 219 bits (242), Expect = 8e-55
Identities = 233/305 (76%), Gaps = 18/305 (6%)
Strand=Plus/Plus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | ||| | ||||| |||| ||||||| | || || |||||||||||||||||||||
Sbjct 138671 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 138730
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120
||||||||||||||||||||||||| |||||| | ||| |||||| | || ||||| |||
Sbjct 138731 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 138790
Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180
| ||| |||||| |||||| ||||||||||| |||||| | ||||||||| || |
Sbjct 138791 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTCGG 138850
Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239
|| ||| || || ||| ||||| | | || | |||||||||
Sbjct 138851 GCGGATTCCTCCTT------------TTGC--TCCTCAGCC--TACGGGGTATTAGCAGC 138894
Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299
|||||||| ||| |||| ||| || |||||||| || ||| ||||||||||||||||
Sbjct 138895 CGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTCCG 138953
Query 300 CCACT 304
|||||
Sbjct 138954 CCACT 138958
>seq2194
Length=21910
Score = 219 bits (242), Expect = 8e-55
Identities = 233/305 (76%), Gaps = 18/305 (6%)
Strand=Plus/Minus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | ||| | ||||| |||| ||||||| | || || |||||||||||||||||||||
Sbjct 17653 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 17594
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120
||||||||||||||||||||||||| |||||| | ||| |||||| | || ||||| |||
Sbjct 17593 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 17534
Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180
| ||| |||||| |||||| ||||||||||| |||||| | ||||||||| || |
Sbjct 17533 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTCGG 17474
Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239
|| ||| || || ||| ||||| | | || | |||||||||
Sbjct 17473 GCGGATTCCTCCTT------------TTGC--TCCTCAGCC--TACGGGGTATTAGCAGC 17430
Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299
|||||||| ||| |||| ||| || |||||||| || ||| ||||||||||||||||
Sbjct 17429 CGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTCCG 17371
Query 300 CCACT 304
|||||
Sbjct 17370 CCACT 17366
>seq5
Length=41956025
Score = 219 bits (242), Expect = 8e-55
Identities = 233/305 (76%), Gaps = 18/305 (6%)
Strand=Plus/Plus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | ||| | ||||| |||| ||||||| | || || |||||||||||||||||||||
Sbjct 32787874 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 32787933
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120
||||||||||||||||||||||||| |||||| | ||| |||||| | || ||||| |||
Sbjct 32787934 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 32787993
Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180
| ||| |||||| |||||| ||||||||||| |||||| | ||||||||| || |
Sbjct 32787994 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTCGG 32788053
Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239
|| ||| || || ||| ||||| | | || | |||||||||
Sbjct 32788054 GCGGATTCCTCCTT------------TTGC--TCCTCAGCC--TACGGGGTATTAGCAGC 32788097
Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299
|||||||| ||| |||| ||| || |||||||| || ||| ||||||||||||||||
Sbjct 32788098 CGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTCCG 32788156
Query 300 CCACT 304
|||||
Sbjct 32788157 CCACT 32788161
Score = 161 bits (178), Expect = 2e-37
Identities = 125/149 (84%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 12 ATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCC 71
|| ||| |||| ||||||| | ||||| ||||||||||||||||||||||||||| ||||
Sbjct 13617424 ATTAGGCTTTCGCCCATTGCGGAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTTGGCC 13617483
Query 72 GTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGG 131
||||||||||||| |||||| | ||| |||||| | || |||| |||| ||| |||||
Sbjct 13617484 ATGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTATTGATCATCGCCTTGG 13617543
Query 132 TGGGCTATTATCTCACCAACTACCTAATC 160
| ||||| ||||||||||||| |||||
Sbjct 13617544 TAAGCTATCATCTCACCAACTAGATAATC 13617572
>seq1
Length=51465339
Score = 219 bits (242), Expect = 8e-55
Identities = 233/305 (76%), Gaps = 18/305 (6%)
Strand=Plus/Plus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | ||| | ||||| |||| ||||||| | || || |||||||||||||||||||||
Sbjct 12124140 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 12124199
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120
||||||||||||||||||||||||| |||||| | ||| |||||| | || ||||| |||
Sbjct 12124200 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 12124259
Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180
| ||| |||||| |||||| ||||||||||| |||||| | ||||||||| || |
Sbjct 12124260 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTCGG 12124319
Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239
|| ||| || || ||| ||||| | | || | |||||||||
Sbjct 12124320 GCGGATTCCTCCTT------------TTGC--TCCTCAGCC--TACGGGGTATTAGCAGC 12124363
Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299
|||||||| ||| |||| ||| || |||||||| || ||| ||||||||||||||||
Sbjct 12124364 CGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTCCG 12124422
Query 300 CCACT 304
|||||
Sbjct 12124423 CCACT 12124427
Score = 219 bits (242), Expect = 8e-55
Identities = 233/305 (76%), Gaps = 18/305 (6%)
Strand=Plus/Minus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | ||| | ||||| |||| ||||||| | || || |||||||||||||||||||||
Sbjct 16944863 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 16944804
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120
||||||||||||||||||||||||| |||||| | ||| |||||| | || ||||| |||
Sbjct 16944803 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 16944744
Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180
| ||| |||||| |||||| ||||||||||| |||||| | ||||||||| || |
Sbjct 16944743 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTCGG 16944684
Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239
|| ||| || || ||| ||||| | | || | |||||||||
Sbjct 16944683 GCGGATTCCTCCTT------------TTGC--TCCTCAGCC--TACGGGGTATTAGCAGC 16944640
Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299
|||||||| ||| |||| ||| || |||||||| || ||| ||||||||||||||||
Sbjct 16944639 CGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTCCG 16944581
Query 300 CCACT 304
|||||
Sbjct 16944580 CCACT 16944576
Score = 134 bits (148), Expect = 3e-29
Identities = 104/124 (84%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 34 AATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCC 93
|| || |||||||||||||||| |||||||| |||||||||||||||||||| ||||||
Sbjct 14945122 AAAATTCCCCACTGCTGCCTCCTGTAGGAGTTTGGGCCGTGTCTCAGTCCCAGTGTGGCT 14945063
Query 94 GTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTA 153
| ||| |||||| | || ||||| |||| ||| |||||| | |||| |||||||||||
Sbjct 14945062 GATCACCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGTTATTGCCTCACCAACTA 14945003
Query 154 CCTA 157
|||
Sbjct 14945002 GCTA 14944999
Score = 93.3 bits (102), Expect = 8e-17
Identities = 95/124 (77%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 36 TATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGT 95
||| |||||||||||||||| || |||||| ||||||||||| ||||||| |||||| |
Sbjct 43839198 TATTCCCCACTGCTGCCTCCTGTGGGAGTCCGGGCCGTGTCTTAGTCCCAGTGTGGCTGA 43839257
Query 96 TCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTACC 155
| | || || || |||| ||| | |||||||| | ||| || |||||||||
Sbjct 43839258 TTATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGAATTTACCTGACCAACTACT 43839317
Query 156 TAAT 159
||||
Sbjct 43839318 TAAT 43839321
>seq4826
Length=244980
Score = 132 bits (146), Expect = 1e-28
Identities = 121/153 (79%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66
|||| ||| || |||| |||||||| ||| || ||||||||||||| ||||| ||||||
Sbjct 125893 GCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCC 125952
Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126
||||||||||||||||||| |||||| | || || || || |||| ||| | ||
Sbjct 125953 GGGCCGTGTCTCAGTCCCAGTGTGGCTGATCGTCCGAAAAGACCAGCTAAGCATCATTGG 126012
Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAAT 159
|||||| || ||| || ||||||||||||||
Sbjct 126013 CTTGGTCAGCCTTTACCTGACCAACTACCTAAT 126045
>seq9
Length=33682890
Score = 127 bits (140), Expect = 4e-27
Identities = 109/134 (81%), Gaps = 2/134 (1%)
Strand=Plus/Plus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCC--CCCACTGCTGCCTCCCGT 58
||| | ||| | ||||| |||| ||||||| | || |||| ||| ||| |||||||| |
Sbjct 3431058 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATCCTCCCCCCTGTTGCCTCCCTT 3431117
Query 59 AGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCG 118
||||||||||||||||||||||||||| |||||| | ||| | |||| | || ||||| |
Sbjct 3431118 AGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCTTCTCGGACCAGCTACTG 3431177
Query 119 ATCGTCGGCTTGGT 132
||| ||| ||||||
Sbjct 3431178 ATCATCGCCTTGGT 3431191
Score = 104 bits (114), Expect = 5e-20
Identities = 148/206 (72%), Gaps = 18/206 (9%)
Strand=Plus/Plus
Query 100 CCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAAT 159
|||||| | || ||||| |||| ||| |||||| |||||| ||||||||||| |||||
Sbjct 15407803 CCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 15407862
Query 160 CGGCCGCGAGCCCATCTTTCAGC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTG 218
| | ||||||||| || | || ||| || || ||| ||||| |
Sbjct 15407863 CAGACGCGAGCCCCTCCTCGGGCGGATTCCTCCTT------------TTGC--TCCTCAG 15407908
Query 219 ACATTATGCGGTATTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCT 278
| || | ||||||||| |||||||| ||| |||| ||| || |||||||| ||
Sbjct 15407909 CC--TACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CT 15407965
Query 279 CACGTGTTACTCACCCGTCCGCCACT 304
||| |||||||||||||||||||||
Sbjct 15407966 TACGCGTTACTCACCCGTCCGCCACT 15407991
>seq21
Length=514035
Score = 120 bits (132), Expect = 6e-25
Identities = 81/91 (89%), Gaps = 0/91 (0%)
Strand=Plus/Minus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | ||| ||||||| |||| ||||||| | || || |||||||||||||||||||||
Sbjct 480338 GGCATTGCTCCATCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 480279
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGG 91
||||||||||||||||||||||||| |||||
Sbjct 480278 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGG 480248
>seq4
Length=35924511
Score = 96.9 bits (106), Expect = 7e-18
Identities = 168/239 (70%), Gaps = 18/239 (8%)
Strand=Plus/Plus
Query 66 TGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCG 125
|||||||||||| || |||| |||||| | ||| ||| || | | |||| |||| |||
Sbjct 9947170 TGGGCCGTGTCTTAG-CCCATTGTGGCTGATCATCCTTTCGGGCTAGCTATTGATCATCG 9947228
Query 126 GCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGCGAT 185
||| || | |||| ||||||||||| ||||| | |||||||| || || ||||
Sbjct 9947229 TCTTATTGAGTTATTGCCTCACCAACTAGCTAATTAGGTGCGAGCCCCTCATTGGGCGA- 9947287
Query 186 AAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTCGTTTC 245
| ||| || ||| ||||| | | || ||||||||| |||||
Sbjct 9947288 ATTTCT----------CATTTTGC--TCCTCAGCC--TA-CAGGTATTAGCAGCCGTTTT 9947332
Query 246 CAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCCACT 304
||| |||||||| ||| || | |||||| || | | |||||||| ||||||||||||
Sbjct 9947333 CAACTGTTATTCCCCTCCCAATGACAGGTT-CTTATGCGTTACTCAGCCGTCCGCCACT 9947390
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 998351817216
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