Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq2698 77.0 4e-12 seq3328 75.2 1e-11 seq3 75.2 1e-11 >seq2698 Length=84112 Score = 77.0 bits (84), Expect = 4e-12 Identities = 81/104 (78%), Gaps = 2/104 (2%) Strand=Plus/Plus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 ||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 51754 CCAACGTAATAGGACCGAAA-TCCTATGATGTTATCCCATGCTAATGTATACAGAGCGTA 51812 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGG 115 || |||||||| ||||||||||| |||| |||| || |||| Sbjct 51813 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAGCGCTGG 51856 Score = 75.2 bits (82), Expect = 1e-11 Identities = 77/98 (79%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 ||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 71804 CCAACGTAATAGGACCGAAA-TCCTATGATGTTATCCCATGCTAATGTATACAGAGCGTA 71862 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||| ||||||||||| |||| |||| || Sbjct 71863 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 71900 >seq3328 Length=34111 Score = 75.2 bits (82), Expect = 1e-11 Identities = 77/98 (79%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 ||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 6724 CCAACGTAATAGGACCGAAA-TCCTATGATGTTATCCCATGCTAATGTATACAGAGCGTA 6666 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||| ||||||||||| |||| |||| || Sbjct 6665 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 6628 >seq3 Length=50312079 Score = 75.2 bits (82), Expect = 1e-11 Identities = 77/98 (79%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 ||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 35842403 CCAACGTAATAGGACCGAAA-TCCTATGATGTTATCCCATGCTAATGTATACAGAGCGTA 35842461 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||| ||||||||||| |||| |||| || Sbjct 35842462 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 35842499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595172173284