Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20
2016-05-24] 4,826 sequences; 421,502,825 total letters
Query= AAMG01001634.1
Length=217
Score E
Sequences producing significant alignments: (Bits) Value
seq2698 77.0 4e-12
seq3328 75.2 1e-11
seq3 75.2 1e-11
>seq2698
Length=84112
Score = 77.0 bits (84), Expect = 4e-12
Identities = 81/104 (78%), Gaps = 2/104 (2%)
Strand=Plus/Plus
Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71
||||| |||||| || | |||||| | |||| |||||||||||||| | | |||||
Sbjct 51754 CCAACGTAATAGGACCGAAA-TCCTATGATGTTATCCCATGCTAATGTATACAGAGCGTA 51812
Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGG 115
|| |||||||| ||||||||||| |||| |||| || ||||
Sbjct 51813 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAGCGCTGG 51856
Score = 75.2 bits (82), Expect = 1e-11
Identities = 77/98 (79%), Gaps = 2/98 (2%)
Strand=Plus/Plus
Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71
||||| |||||| || | |||||| | |||| |||||||||||||| | | |||||
Sbjct 71804 CCAACGTAATAGGACCGAAA-TCCTATGATGTTATCCCATGCTAATGTATACAGAGCGTA 71862
Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109
|| |||||||| ||||||||||| |||| |||| ||
Sbjct 71863 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 71900
>seq3328
Length=34111
Score = 75.2 bits (82), Expect = 1e-11
Identities = 77/98 (79%), Gaps = 2/98 (2%)
Strand=Plus/Minus
Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71
||||| |||||| || | |||||| | |||| |||||||||||||| | | |||||
Sbjct 6724 CCAACGTAATAGGACCGAAA-TCCTATGATGTTATCCCATGCTAATGTATACAGAGCGTA 6666
Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109
|| |||||||| ||||||||||| |||| |||| ||
Sbjct 6665 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 6628
>seq3
Length=50312079
Score = 75.2 bits (82), Expect = 1e-11
Identities = 77/98 (79%), Gaps = 2/98 (2%)
Strand=Plus/Plus
Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71
||||| |||||| || | |||||| | |||| |||||||||||||| | | |||||
Sbjct 35842403 CCAACGTAATAGGACCGAAA-TCCTATGATGTTATCCCATGCTAATGTATACAGAGCGTA 35842461
Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109
|| |||||||| ||||||||||| |||| |||| ||
Sbjct 35842462 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 35842499
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 595172173284
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |