Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq4825 223 8e-56 seq1 223 8e-56 seq4826 167 5e-39 seq1670 167 5e-39 seq7 167 5e-39 seq11 154 3e-35 seq2 141 2e-31 seq5 98.7 2e-18 >seq4825 Length=155848 Score = 223 bits (246), Expect = 8e-56 Identities = 301/409 (74%), Gaps = 18/409 (4%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | | Sbjct 106281 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 106222 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||| | | |||| | | |||||| |||| | || |||||| ||| Sbjct 106221 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 106162 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177 ||||||| || ||| || ||||| || | || | ||| ||||| || || | | Sbjct 106161 ACATTCTCGCTTCCGCTTCG--TCCACTAC-CGCTCGCGCGGGTGCTTC-CCTCTAAGGC 106106 Query 178 G--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231 | ||||||||||||| | | ||| | ||||||||||||| ||| |||| | Sbjct 106105 GGAACGCTCCCCTACCGATGTATTTTTACA---TCCCACAGCTTCGGCAGATCGCTTA-G 106050 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291 ||||| | ||| ||||||| | | || || ||||||||||||||||||||||||||| Sbjct 106049 CCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAG 105991 Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351 | |||||||||| | || |||||||||| ||||| ||| | | || |||||| ||||| Sbjct 105990 GGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCACTG 105931 Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || || |||||||||||||||| ||||| ||||||||||||||||| Sbjct 105930 AGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 105882 Score = 223 bits (246), Expect = 8e-56 Identities = 301/409 (74%), Gaps = 18/409 (4%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | | Sbjct 133760 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 133819 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||| | | |||| | | |||||| |||| | || |||||| ||| Sbjct 133820 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 133879 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177 ||||||| || ||| || ||||| || | || | ||| ||||| || || | | Sbjct 133880 ACATTCTCGCTTCCGCTTCG--TCCACTAC-CGCTCGCGCGGGTGCTTC-CCTCTAAGGC 133935 Query 178 G--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231 | ||||||||||||| | | ||| | ||||||||||||| ||| |||| | Sbjct 133936 GGAACGCTCCCCTACCGATGTATTTTTACA---TCCCACAGCTTCGGCAGATCGCTTA-G 133991 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291 ||||| | ||| ||||||| | | || || ||||||||||||||||||||||||||| Sbjct 133992 CCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAG 134050 Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351 | |||||||||| | || |||||||||| ||||| ||| | | || |||||| ||||| Sbjct 134051 GGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCACTG 134110 Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || || |||||||||||||||| ||||| ||||||||||||||||| Sbjct 134111 AGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 134159 >seq1 Length=51465339 Score = 223 bits (246), Expect = 8e-56 Identities = 301/409 (74%), Gaps = 18/409 (4%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | | Sbjct 16931458 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 16931517 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||| | | |||| | | |||||| |||| | || |||||| ||| Sbjct 16931518 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 16931577 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177 ||||||| || ||| || ||||| || | || | ||| ||||| || || | | Sbjct 16931578 ACATTCTCGCTTCCGCTTCG--TCCACTAC-CGCTCGCGCGGGTGCTTC-CCTCTAAGGC 16931633 Query 178 G--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231 | ||||||||||||| | | ||| | ||||||||||||| ||| |||| | Sbjct 16931634 GGAACGCTCCCCTACCGATGTATTTTTACA---TCCCACAGCTTCGGCAGATCGCTTA-G 16931689 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291 ||||| | ||| ||||||| | | || || ||||||||||||||||||||||||||| Sbjct 16931690 CCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAG 16931748 Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351 | |||||||||| | || |||||||||| ||||| ||| | | || |||||| ||||| Sbjct 16931749 GGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCACTG 16931808 Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || || |||||||||||||||| ||||| ||||||||||||||||| Sbjct 16931809 AGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 16931857 Score = 129 bits (142), Expect = 1e-27 Identities = 215/300 (72%), Gaps = 18/300 (6%) Strand=Plus/Plus Query 63 GGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCTGC 121 ||||||||| | | |||| | | |||||| |||| | || |||||| ||| | Sbjct 34427428 GGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCGAC 34427487 Query 122 ATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACACG- 178 |||||| || ||| || ||||| | | || | ||| ||||| || || | || Sbjct 34427488 ATTCTCGCTTCCGCTTCG--TCCACTGC-CGCTCGCGCGGGTGCTTC-CCTCTAAGGCGG 34427543 Query 179 -ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAGCC 233 ||||||||||||| | | ||| | ||||||||||||| ||| |||| ||| Sbjct 34427544 AACGCTCCCCTACCGATGTATTTTTACA---TCCCACAGCTTCGGCAGATCGCTTA-GCC 34427599 Query 234 CCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGA 293 ||| | ||| ||||||| | | || || |||||||||||||||||||||||||||| Sbjct 34427600 CCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAGGG 34427658 Query 294 TGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAG 353 |||||||||| | || |||||||||| ||| | ||| | | || |||||| ||||||| Sbjct 34427659 TGGCTGCTTCTAGGCAAACCTCCTGGCTGTTTCTGCACCCCTACCTCCTTTATCACTGAG 34427718 >seq4826 Length=244980 Score = 167 bits (184), Expect = 5e-39 Identities = 153/192 (80%), Gaps = 6/192 (3%) Strand=Plus/Plus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268 ||||||| | || |||| ||||| | |||||| |||| || ||| || ||||||| Sbjct 89000 GCTTCGGTGAATCACTTGAGCCCTGATACATTTTCGGTGCCATGGAG---CTAGACCAGT 89056 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328 |||||||||||| |||| ||||||||||||||||||||| |||||||||||||| || Sbjct 89057 GAGCTATTACGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGTCATCG 89116 Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388 | ||| |||||| ||||| ||| | ||||||| ||||||| | |||||||||| Sbjct 89117 CTCGATCACTTCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTACGATCTGGGCT 89176 Query 389 GTTTCCCTCTCG 400 |||||||||||| Sbjct 89177 GTTTCCCTCTCG 89188 >seq1670 Length=24701 Score = 167 bits (184), Expect = 5e-39 Identities = 153/192 (80%), Gaps = 6/192 (3%) Strand=Plus/Minus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268 ||||||| | || |||| ||||| | |||||| |||| || ||| || ||||||| Sbjct 22102 GCTTCGGTGAATCACTTGAGCCCTGATACATTTTCGGTGCCATGGAG---CTAGACCAGT 22046 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328 |||||||||||| |||| ||||||||||||||||||||| |||||||||||||| || Sbjct 22045 GAGCTATTACGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGTCATCG 21986 Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388 | ||| |||||| ||||| ||| | ||||||| ||||||| | |||||||||| Sbjct 21985 CTCGATCACTTCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTACGATCTGGGCT 21926 Query 389 GTTTCCCTCTCG 400 |||||||||||| Sbjct 21925 GTTTCCCTCTCG 21914 >seq7 Length=36358036 Score = 167 bits (184), Expect = 5e-39 Identities = 153/192 (80%), Gaps = 6/192 (3%) Strand=Plus/Minus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268 ||||||| | || |||| ||||| | |||||| |||| || ||| || ||||||| Sbjct 11507226 GCTTCGGTGAATCACTTGAGCCCTGATACATTTTCGGTGCCATGGAG---CTAGACCAGT 11507170 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328 |||||||||||| |||| ||||||||||||||||||||| |||||||||||||| || Sbjct 11507169 GAGCTATTACGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGTCATCG 11507110 Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388 | ||| |||||| ||||| ||| | ||||||| ||||||| | |||||||||| Sbjct 11507109 CTCGATCACTTCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTACGATCTGGGCT 11507050 Query 389 GTTTCCCTCTCG 400 |||||||||||| Sbjct 11507049 GTTTCCCTCTCG 11507038 >seq11 Length=1570004 Score = 154 bits (170), Expect = 3e-35 Identities = 152/194 (78%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266 |||||||||| || || |||| ||||| | ||| || |||| | | || || || Sbjct 155319 CCACAGCTTCAGCAAATCGCTTAT-CCCCGTT-CATCTTCAGCGCAAGAGCGCTCGATCA 155262 Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326 |||||||||||||||||||||||||| || ||||||| | || |||||||||| ||||| Sbjct 155261 GTGAGCTATTACGCACTCTTTCAAGGGTGTCTGCTTCTAGGCAAACCTCCTGGCTGTCTC 155202 Query 327 CGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGG 386 ||| | | || |||||| ||||||| || |||||||||||||||| ||||| | | Sbjct 155201 TGCACCCCTACCTCCTTTATCACTGAGCAGTCATTTAGGGGCCTTAGCTGGTGATCCGTG 155142 Query 387 CTGTTTCCCTCTCG 400 ||||||||||||| Sbjct 155141 TTGTTTCCCTCTCG 155128 >seq2 Length=43913520 Score = 141 bits (156), Expect = 2e-31 Identities = 113/136 (83%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 265 CAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTC 324 ||||||||||||| |||||||| || || |||||||||| | || |||||||||| |||| Sbjct 2342153 CAGTGAGCTATTATGCACTCTTCCAGGGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTC 2342094 Query 325 TACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTG 384 | ||| | | || |||||| ||||||| || ||||||| |||||||| ||||||| Sbjct 2342093 TCTGCACCCCTACCTCCTTTATCACTGAGCGGTCATTTAGGGGTCTTAGCTGGTGATCTG 2342034 Query 385 GGCTGTTTCCCTCTCG 400 |||||||||||||||| Sbjct 2342033 GGCTGTTTCCCTCTCG 2342018 Score = 111 bits (122), Expect = 4e-22 Identities = 95/116 (82%), Gaps = 6/116 (5%) Strand=Plus/Minus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268 ||||||| | || |||| ||||| | |||||| |||| || ||| || ||||||| Sbjct 28880233 GCTTCGGTGAATCACTTGAGCCCTGATACATTTTCGGTGCCATGGAG---CTAGACCAGT 28880177 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTC 324 |||||||||||| |||| ||||||||||||||||||||| |||||||||||||| Sbjct 28880176 GAGCTATTACGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGTC 28880121 >seq5 Length=41956025 Score = 98.7 bits (108), Expect = 2e-18 Identities = 125/167 (75%), Gaps = 4/167 (2%) Strand=Plus/Plus Query 214 TTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCT 273 |||| | ||| |||| |||||| | || ||||||| | | || | |||||||| Sbjct 38064929 TTCGTCAGATCGCTTA-GCCCCGTTT-ATCTTCGGCGCAAGAGCGCTCAATCAGTGAGCC 38064986 Query 274 ATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCC-TGGTTGTCTACGCAAC 332 ||||||||||| ||||||| ||| |||||| | || || |||| ||| | ||| ||| | Sbjct 38064987 ATTACGCACTC-TTCAAGGGTGGTTGCTTCTAGGCAAATCTCCGTGGCTATCTTTGCACC 38065045 Query 333 TCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATG 379 | || |||||| ||||||||| || ||||||| |||||||| || Sbjct 38065046 CCAACCTCCTTTACCACTGAGTTGTCATTTAGGGGACTTAGCTGGTG 38065092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177543169024