Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20
2016-05-24] 4,826 sequences; 421,502,825 total letters
Query= AAMG01001752.1
Length=400
Score E
Sequences producing significant alignments: (Bits) Value
seq4825 223 8e-56
seq1 223 8e-56
seq4826 167 5e-39
seq1670 167 5e-39
seq7 167 5e-39
seq11 154 3e-35
seq2 141 2e-31
seq5 98.7 2e-18
>seq4825
Length=155848
Score = 223 bits (246), Expect = 8e-56
Identities = 301/409 (74%), Gaps = 18/409 (4%)
Strand=Plus/Minus
Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60
||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | |
Sbjct 106281 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 106222
Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119
||||||||| | | |||| | | |||||| |||| | || |||||| |||
Sbjct 106221 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 106162
Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177
||||||| || ||| || ||||| || | || | ||| ||||| || || | |
Sbjct 106161 ACATTCTCGCTTCCGCTTCG--TCCACTAC-CGCTCGCGCGGGTGCTTC-CCTCTAAGGC 106106
Query 178 G--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231
| ||||||||||||| | | ||| | ||||||||||||| ||| |||| |
Sbjct 106105 GGAACGCTCCCCTACCGATGTATTTTTACA---TCCCACAGCTTCGGCAGATCGCTTA-G 106050
Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291
||||| | ||| ||||||| | | || || |||||||||||||||||||||||||||
Sbjct 106049 CCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAG 105991
Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351
| |||||||||| | || |||||||||| ||||| ||| | | || |||||| |||||
Sbjct 105990 GGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCACTG 105931
Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400
|| || |||||||||||||||| ||||| |||||||||||||||||
Sbjct 105930 AGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 105882
Score = 223 bits (246), Expect = 8e-56
Identities = 301/409 (74%), Gaps = 18/409 (4%)
Strand=Plus/Plus
Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60
||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | |
Sbjct 133760 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 133819
Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119
||||||||| | | |||| | | |||||| |||| | || |||||| |||
Sbjct 133820 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 133879
Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177
||||||| || ||| || ||||| || | || | ||| ||||| || || | |
Sbjct 133880 ACATTCTCGCTTCCGCTTCG--TCCACTAC-CGCTCGCGCGGGTGCTTC-CCTCTAAGGC 133935
Query 178 G--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231
| ||||||||||||| | | ||| | ||||||||||||| ||| |||| |
Sbjct 133936 GGAACGCTCCCCTACCGATGTATTTTTACA---TCCCACAGCTTCGGCAGATCGCTTA-G 133991
Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291
||||| | ||| ||||||| | | || || |||||||||||||||||||||||||||
Sbjct 133992 CCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAG 134050
Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351
| |||||||||| | || |||||||||| ||||| ||| | | || |||||| |||||
Sbjct 134051 GGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCACTG 134110
Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400
|| || |||||||||||||||| ||||| |||||||||||||||||
Sbjct 134111 AGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 134159
>seq1
Length=51465339
Score = 223 bits (246), Expect = 8e-56
Identities = 301/409 (74%), Gaps = 18/409 (4%)
Strand=Plus/Plus
Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60
||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | |
Sbjct 16931458 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 16931517
Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119
||||||||| | | |||| | | |||||| |||| | || |||||| |||
Sbjct 16931518 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 16931577
Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177
||||||| || ||| || ||||| || | || | ||| ||||| || || | |
Sbjct 16931578 ACATTCTCGCTTCCGCTTCG--TCCACTAC-CGCTCGCGCGGGTGCTTC-CCTCTAAGGC 16931633
Query 178 G--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231
| ||||||||||||| | | ||| | ||||||||||||| ||| |||| |
Sbjct 16931634 GGAACGCTCCCCTACCGATGTATTTTTACA---TCCCACAGCTTCGGCAGATCGCTTA-G 16931689
Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291
||||| | ||| ||||||| | | || || |||||||||||||||||||||||||||
Sbjct 16931690 CCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAG 16931748
Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351
| |||||||||| | || |||||||||| ||||| ||| | | || |||||| |||||
Sbjct 16931749 GGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCACTG 16931808
Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400
|| || |||||||||||||||| ||||| |||||||||||||||||
Sbjct 16931809 AGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 16931857
Score = 129 bits (142), Expect = 1e-27
Identities = 215/300 (72%), Gaps = 18/300 (6%)
Strand=Plus/Plus
Query 63 GGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCTGC 121
||||||||| | | |||| | | |||||| |||| | || |||||| ||| |
Sbjct 34427428 GGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCGAC 34427487
Query 122 ATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACACG- 178
|||||| || ||| || ||||| | | || | ||| ||||| || || | ||
Sbjct 34427488 ATTCTCGCTTCCGCTTCG--TCCACTGC-CGCTCGCGCGGGTGCTTC-CCTCTAAGGCGG 34427543
Query 179 -ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAGCC 233
||||||||||||| | | ||| | ||||||||||||| ||| |||| |||
Sbjct 34427544 AACGCTCCCCTACCGATGTATTTTTACA---TCCCACAGCTTCGGCAGATCGCTTA-GCC 34427599
Query 234 CCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGA 293
||| | ||| ||||||| | | || || ||||||||||||||||||||||||||||
Sbjct 34427600 CCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAGGG 34427658
Query 294 TGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAG 353
|||||||||| | || |||||||||| ||| | ||| | | || |||||| |||||||
Sbjct 34427659 TGGCTGCTTCTAGGCAAACCTCCTGGCTGTTTCTGCACCCCTACCTCCTTTATCACTGAG 34427718
>seq4826
Length=244980
Score = 167 bits (184), Expect = 5e-39
Identities = 153/192 (80%), Gaps = 6/192 (3%)
Strand=Plus/Plus
Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268
||||||| | || |||| ||||| | |||||| |||| || ||| || |||||||
Sbjct 89000 GCTTCGGTGAATCACTTGAGCCCTGATACATTTTCGGTGCCATGGAG---CTAGACCAGT 89056
Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328
|||||||||||| |||| ||||||||||||||||||||| |||||||||||||| ||
Sbjct 89057 GAGCTATTACGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGTCATCG 89116
Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388
| ||| |||||| ||||| ||| | ||||||| ||||||| | ||||||||||
Sbjct 89117 CTCGATCACTTCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTACGATCTGGGCT 89176
Query 389 GTTTCCCTCTCG 400
||||||||||||
Sbjct 89177 GTTTCCCTCTCG 89188
>seq1670
Length=24701
Score = 167 bits (184), Expect = 5e-39
Identities = 153/192 (80%), Gaps = 6/192 (3%)
Strand=Plus/Minus
Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268
||||||| | || |||| ||||| | |||||| |||| || ||| || |||||||
Sbjct 22102 GCTTCGGTGAATCACTTGAGCCCTGATACATTTTCGGTGCCATGGAG---CTAGACCAGT 22046
Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328
|||||||||||| |||| ||||||||||||||||||||| |||||||||||||| ||
Sbjct 22045 GAGCTATTACGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGTCATCG 21986
Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388
| ||| |||||| ||||| ||| | ||||||| ||||||| | ||||||||||
Sbjct 21985 CTCGATCACTTCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTACGATCTGGGCT 21926
Query 389 GTTTCCCTCTCG 400
||||||||||||
Sbjct 21925 GTTTCCCTCTCG 21914
>seq7
Length=36358036
Score = 167 bits (184), Expect = 5e-39
Identities = 153/192 (80%), Gaps = 6/192 (3%)
Strand=Plus/Minus
Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268
||||||| | || |||| ||||| | |||||| |||| || ||| || |||||||
Sbjct 11507226 GCTTCGGTGAATCACTTGAGCCCTGATACATTTTCGGTGCCATGGAG---CTAGACCAGT 11507170
Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328
|||||||||||| |||| ||||||||||||||||||||| |||||||||||||| ||
Sbjct 11507169 GAGCTATTACGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGTCATCG 11507110
Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388
| ||| |||||| ||||| ||| | ||||||| ||||||| | ||||||||||
Sbjct 11507109 CTCGATCACTTCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTACGATCTGGGCT 11507050
Query 389 GTTTCCCTCTCG 400
||||||||||||
Sbjct 11507049 GTTTCCCTCTCG 11507038
>seq11
Length=1570004
Score = 154 bits (170), Expect = 3e-35
Identities = 152/194 (78%), Gaps = 2/194 (1%)
Strand=Plus/Minus
Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266
|||||||||| || || |||| ||||| | ||| || |||| | | || || ||
Sbjct 155319 CCACAGCTTCAGCAAATCGCTTAT-CCCCGTT-CATCTTCAGCGCAAGAGCGCTCGATCA 155262
Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326
|||||||||||||||||||||||||| || ||||||| | || |||||||||| |||||
Sbjct 155261 GTGAGCTATTACGCACTCTTTCAAGGGTGTCTGCTTCTAGGCAAACCTCCTGGCTGTCTC 155202
Query 327 CGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGG 386
||| | | || |||||| ||||||| || |||||||||||||||| ||||| | |
Sbjct 155201 TGCACCCCTACCTCCTTTATCACTGAGCAGTCATTTAGGGGCCTTAGCTGGTGATCCGTG 155142
Query 387 CTGTTTCCCTCTCG 400
|||||||||||||
Sbjct 155141 TTGTTTCCCTCTCG 155128
>seq2
Length=43913520
Score = 141 bits (156), Expect = 2e-31
Identities = 113/136 (83%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 265 CAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTC 324
||||||||||||| |||||||| || || |||||||||| | || |||||||||| ||||
Sbjct 2342153 CAGTGAGCTATTATGCACTCTTCCAGGGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTC 2342094
Query 325 TACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTG 384
| ||| | | || |||||| ||||||| || ||||||| |||||||| |||||||
Sbjct 2342093 TCTGCACCCCTACCTCCTTTATCACTGAGCGGTCATTTAGGGGTCTTAGCTGGTGATCTG 2342034
Query 385 GGCTGTTTCCCTCTCG 400
||||||||||||||||
Sbjct 2342033 GGCTGTTTCCCTCTCG 2342018
Score = 111 bits (122), Expect = 4e-22
Identities = 95/116 (82%), Gaps = 6/116 (5%)
Strand=Plus/Minus
Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268
||||||| | || |||| ||||| | |||||| |||| || ||| || |||||||
Sbjct 28880233 GCTTCGGTGAATCACTTGAGCCCTGATACATTTTCGGTGCCATGGAG---CTAGACCAGT 28880177
Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTC 324
|||||||||||| |||| ||||||||||||||||||||| ||||||||||||||
Sbjct 28880176 GAGCTATTACGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGTC 28880121
>seq5
Length=41956025
Score = 98.7 bits (108), Expect = 2e-18
Identities = 125/167 (75%), Gaps = 4/167 (2%)
Strand=Plus/Plus
Query 214 TTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCT 273
|||| | ||| |||| |||||| | || ||||||| | | || | ||||||||
Sbjct 38064929 TTCGTCAGATCGCTTA-GCCCCGTTT-ATCTTCGGCGCAAGAGCGCTCAATCAGTGAGCC 38064986
Query 274 ATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCC-TGGTTGTCTACGCAAC 332
||||||||||| ||||||| ||| |||||| | || || |||| ||| | ||| ||| |
Sbjct 38064987 ATTACGCACTC-TTCAAGGGTGGTTGCTTCTAGGCAAATCTCCGTGGCTATCTTTGCACC 38065045
Query 333 TCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATG 379
| || |||||| ||||||||| || ||||||| |||||||| ||
Sbjct 38065046 CCAACCTCCTTTACCACTGAGTTGTCATTTAGGGGACTTAGCTGGTG 38065092
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1177543169024
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