Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= AAMG01001756.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq4 109 1e-21 seq5 100 5e-19 >seq4 Length=35924511 Score = 109 bits (120), Expect = 1e-21 Identities = 184/267 (69%), Gaps = 6/267 (2%) Strand=Plus/Minus Query 2 GAGTCAATGTCCTAGGGCATGTGTAGGGGTGGGTAAAAATGGAAATTTGAAATGTTGGGG 61 |||||||||||| || | || || || ||||| || ||||| | |||| | ||||| Sbjct 28312025 GAGTCAATGTCCGAGATCGTGCGTGGGTGTGGGGAAGAATGGTGAGTTGATAAATTGGGC 28311966 Query 62 AGAGTCCGACCCGAATGTTAAAGTCGGAGCATGCGGTGTGGATCTTGGTGATGGGACCTT 121 ||| | ||| || |||| ||| |||||||| || || |||| ||| || ||| | | Sbjct 28311965 TGAGACTGACTCGGGTGTTCGAGTTGGAGCATGTGGGGTTAATCTGGGTAATCGGAGCCT 28311906 Query 122 GGTTACCGGGTCGGTTTATCAAGGGGCCCCACATGGGTTCTTCTTAGTAAATAACAACAA 181 ||| |||||||| | || || || || |||| ||||| || ||| | | | Sbjct 28311905 GGTAACCGGGTCAGAGTACCAGGGTGCAGCACAAGGGTTTTTTTTA------ACGGAGAG 28311852 Query 182 AAAGGATGGGCAAAATAGTAAATTGACAAAGATTGATGTTCCTGATGAATTTTCTGGATT 241 | || ||||||||| |||||| ||| |||| ||| | ||||| |||| || Sbjct 28311851 GAGAGAGGGGCAAAATTGTAAATCAGTAAAAGTTGAAGTTTCCGATGATTTTTGCACGTT 28311792 Query 242 TGTGCAATCTGGATGCTGTGTGGAGAT 268 ||| || || || ||||| ||||| || Sbjct 28311791 TGTACAGTCAGGCTGCTGCGTGGAAAT 28311765 >seq5 Length=41956025 Score = 100 bits (110), Expect = 5e-19 Identities = 182/270 (67%), Gaps = 15/270 (6%) Strand=Plus/Plus Query 1 CGAGTCAATGTCCTAGGGCATGTGTAGGGGTGGGTAAAAATGGAAATTTGAAATGTTGGG 60 ||||||| ||||| ||| | ||||| |||||||| || ||||| || | ||||||| Sbjct 10910034 CGAGTCAGTGTCCGAGGTCGTGTGTTGGGGTGGGGAAGAATGGGGGCTTCATGTGTTGGG 10910093 Query 61 GAGAGTCCGACCCGAATGTTAAAGTCGGAGCATGCGGTGTGGATCTTGGTGATGGGACCT 120 |||| ||| || ||| ||| || || || || || | | ||||| | | || Sbjct 10910094 CTGAGTGTGACTCGGCTGTACGAGTTGGGGCGTGTGGGGTCAGTTTGGGTGACTGCAGCT 10910153 Query 121 TGGTTACCGGGTCGGTTTATCAAGGGGCCCCACATGGGTTCTTCTTAGTAAATAACAACA 180 |||| || || || | || ||||||||||| || | ||||| | || | Sbjct 10910154 TGGTCACTGGTTCAGAGTACCAAGGGGCCCCTCAAGCCTTCTTTCTTGTCA--------- 10910204 Query 181 AAAAGGATGGGCAAAATAGTAAATTGACAAAGATTGATGTTCCTGATGAATTTTCTGGAT 240 ||||||| | | |||||||| || ||||| |||||| ||| |||||| | Sbjct 10910205 ------ATGGGCAGATTGGTAAATTGCTCAAAATTGAGGTTCCTAGTGATTTTTCTTCCT 10910258 Query 241 TTGTGCAATCTGGATGCTGTGTGGAGATCT 270 | || ||||| || |||||||| || |||| Sbjct 10910259 TCGTCCAATCAGGTTGCTGTGTCGAAATCT 10910288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918355678016