Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq4825 167 4e-39 seq2194 167 4e-39 seq1 167 4e-39 seq5 152 9e-35 seq4826 143 4e-32 seq8 98.7 2e-18 >seq4825 Length=155848 Score = 167 bits (184), Expect = 4e-39 Identities = 208/285 (73%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | | |||||| || |||||| |||||||| | Sbjct 101716 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 101657 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || |||||||||||||||||| ||| | |||||| |||| || | | |||| || Sbjct 101656 CCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAG 101597 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 |||||| | || | ||||||||||| | ||| || | ||||| Sbjct 101596 CTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTAAAA 101537 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || |||||| | |||||| |||||||| |||||||||||||||| ||| |||||| Sbjct 101536 AGCCACCTACAGACGCTTTACGCCCAATAATTCCGGATAACGCTTGCATCCTCTGTATTA 101477 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||| ||||||||| ||||||||| ||| || Sbjct 101476 CCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATA 101432 Score = 167 bits (184), Expect = 4e-39 Identities = 208/285 (73%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | | |||||| || |||||| |||||||| | Sbjct 138325 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 138384 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || |||||||||||||||||| ||| | |||||| |||| || | | |||| || Sbjct 138385 CCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAG 138444 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 |||||| | || | ||||||||||| | ||| || | ||||| Sbjct 138445 CTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTAAAA 138504 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || |||||| | |||||| |||||||| |||||||||||||||| ||| |||||| Sbjct 138505 AGCCACCTACAGACGCTTTACGCCCAATAATTCCGGATAACGCTTGCATCCTCTGTATTA 138564 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||| ||||||||| ||||||||| ||| || Sbjct 138565 CCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATA 138609 >seq2194 Length=21910 Score = 167 bits (184), Expect = 4e-39 Identities = 208/285 (73%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | | |||||| || |||||| |||||||| | Sbjct 17999 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 17940 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || |||||||||||||||||| ||| | |||||| |||| || | | |||| || Sbjct 17939 CCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAG 17880 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 |||||| | || | ||||||||||| | ||| || | ||||| Sbjct 17879 CTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTAAAA 17820 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || |||||| | |||||| |||||||| |||||||||||||||| ||| |||||| Sbjct 17819 AGCCACCTACAGACGCTTTACGCCCAATAATTCCGGATAACGCTTGCATCCTCTGTATTA 17760 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||| ||||||||| ||||||||| ||| || Sbjct 17759 CCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATA 17715 >seq1 Length=51465339 Score = 167 bits (184), Expect = 4e-39 Identities = 208/285 (73%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | | |||||| || |||||| |||||||| | Sbjct 12123794 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 12123853 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || |||||||||||||||||| ||| | |||||| |||| || | | |||| || Sbjct 12123854 CCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAG 12123913 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 |||||| | || | ||||||||||| | ||| || | ||||| Sbjct 12123914 CTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTAAAA 12123973 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || |||||| | |||||| |||||||| |||||||||||||||| ||| |||||| Sbjct 12123974 AGCCACCTACAGACGCTTTACGCCCAATAATTCCGGATAACGCTTGCATCCTCTGTATTA 12124033 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||| ||||||||| ||||||||| ||| || Sbjct 12124034 CCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATA 12124078 Score = 89.7 bits (98), Expect = 9e-16 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 217 TCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGC 276 |||||||||||||||| ||| |||||||||||||||||||||| ||||||||| || Sbjct 16944998 TCCGGATAACGCTTGCATCCTCTGTATTACCGCGGCTGCTGGCACAGAGTTAGCCGATGC 16944939 Query 277 TTATTCCTCAGGTA 290 ||||||| ||| || Sbjct 16944938 TTATTCCCCAGATA 16944925 >seq5 Length=41956025 Score = 152 bits (168), Expect = 9e-35 Identities = 182/247 (74%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 44 GCCTTCGCCACTGGTGTTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCC 103 || |||||| |||||||| | | || |||||||||||||||||| ||| | |||||| Sbjct 32787566 GCTTTCGCCGTTGGTGTTCTTTCCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCC 32787625 Query 104 GATTGCCTCTCCAGCACTCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCAT 163 |||| || | | |||| || |||||| | || | ||||||||||| Sbjct 32787626 CTCTGCCCCTACCGTACTCCAGCTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTG 32787685 Query 164 AGTTTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGAT 223 | ||| || | ||||| || |||||| | |||||| |||||||| ||||||| Sbjct 32787686 GGATTTGACGGCGGACTTAAAAAGCCACCTACAGACGCTTTACGCCCAATAATTCCGGAT 32787745 Query 224 AACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCC 283 ||||||||| ||| |||||||||||||||||||||| ||||||||| ||||||||| Sbjct 32787746 AACGCTTGCATCCTCTGTATTACCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCC 32787805 Query 284 TCAGGTA 290 ||| || Sbjct 32787806 CCAGATA 32787812 Score = 95.1 bits (104), Expect = 2e-17 Identities = 146/207 (71%), Gaps = 1/207 (0%) Strand=Plus/Minus Query 44 GCCTTCGCCACTGGTGTTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCC 103 || ||||||| |||||||| ||| || |||||||||||||| ||| ||| | |||| | Sbjct 13614272 GCTTTCGCCATTGGTGTTCTTCCCGATCTCTACGCATTTCACTGCTCCACCAGAAATTTC 13614213 Query 104 GATTGCCTCTCCAGCACTCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCAT 163 || | || | | |||| || |||||| | | | | | | ||||||||||| Sbjct 13614212 CTCTGTCCCTACCGTACTCCAGCTTGGTAGTTTCCACTCCTGTCGA-GGGTTGAGCCCTG 13614154 Query 164 AGTTTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGAT 223 | ||| || | |||| || |||||| | |||||| |||||||| ||| ||| Sbjct 13614153 GGATTTGACGGCGGACTCAAAAAGCCACCTACAGACGCTTTACGCCCAATAATTCCAGAT 13614094 Query 224 AACGCTTGCCACCTACGTATTACCGCG 250 || |||||| ||| ||||||||||| Sbjct 13614093 AATGCTTGCATCCTCTGTATTACCGCG 13614067 >seq4826 Length=244980 Score = 143 bits (158), Expect = 4e-32 Identities = 206/289 (71%), Gaps = 10/289 (3%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||| |||||||| || ||||||| || |||| | | |||||||| ||| || Sbjct 125536 CCCATGCTTTCGCACCCCAGCGTCGGTAGGGACCCAGAGAGCTGCCTTCGCTTTTGGCGT 125595 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||| |||| |||| || |||||||| ||||||||| |||||| | ||||| ||| Sbjct 125596 TCCTTCGTAGATCTCCGGATTTCACCCCTACACACGAAATTCCACTCTCCTCTGTCTCAC 125655 Query 121 TCAAGAAAAACAGTTTCAAATGCAG---GCTA-TGGGTTGAGCCCATAGTTTTCACATCT 176 ||||| || ||||| | ||| || | | ||| | | |||||| | Sbjct 125656 TCAAGTGAATTGGTTTCGAGAGCATTCCGCAAGTTTTTTGCGAC------TTTCACTTTC 125709 Query 177 GACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACC 236 || | | |||||||| ||||||||| |||| | | |||| | ||| |||||| || Sbjct 125710 AACCCGATTCACCGCCTACGTGCCCTTTACGCCCAGTCATTCCGAAGAACACTTGCCCCC 125769 Query 237 TACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285 ||| |||||||||||||||||||| ||||||||| ||||| |||||| Sbjct 125770 CCCGTCTTACCGCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTC 125818 >seq8 Length=31745509 Score = 98.7 bits (108), Expect = 2e-18 Identities = 78/94 (83%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || |||||| | |||||| |||||||| || |||||||||||| ||| |||||||| Sbjct 29175078 CCACCTACAGACGCTTTACGCCCAATAATTCTAGATAACGCTTGCATCCTCTGTATTACC 29175137 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATT 281 |||||||||||||| ||||||||| ||||||| Sbjct 29175138 GCGGCTGCTGGCACAGAGTTAGCCGATGCTTATT 29175171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828761252046