Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20
2016-05-24] 4,826 sequences; 421,502,825 total letters
Query= AAMG01001844.1
Length=290
Score E
Sequences producing significant alignments: (Bits) Value
seq4825 167 4e-39
seq2194 167 4e-39
seq1 167 4e-39
seq5 152 9e-35
seq4826 143 4e-32
seq8 98.7 2e-18
>seq4825
Length=155848
Score = 167 bits (184), Expect = 4e-39
Identities = 208/285 (73%), Gaps = 0/285 (0%)
Strand=Plus/Minus
Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65
||||||| ||||| |||||| | | |||||| || |||||| |||||||| |
Sbjct 101716 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 101657
Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125
| || |||||||||||||||||| ||| | |||||| |||| || | | |||| ||
Sbjct 101656 CCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAG 101597
Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185
|||||| | || | ||||||||||| | ||| || | |||||
Sbjct 101596 CTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTAAAA 101537
Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245
|| |||||| | |||||| |||||||| |||||||||||||||| ||| ||||||
Sbjct 101536 AGCCACCTACAGACGCTTTACGCCCAATAATTCCGGATAACGCTTGCATCCTCTGTATTA 101477
Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290
|||||||||||||||| ||||||||| ||||||||| ||| ||
Sbjct 101476 CCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATA 101432
Score = 167 bits (184), Expect = 4e-39
Identities = 208/285 (73%), Gaps = 0/285 (0%)
Strand=Plus/Plus
Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65
||||||| ||||| |||||| | | |||||| || |||||| |||||||| |
Sbjct 138325 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 138384
Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125
| || |||||||||||||||||| ||| | |||||| |||| || | | |||| ||
Sbjct 138385 CCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAG 138444
Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185
|||||| | || | ||||||||||| | ||| || | |||||
Sbjct 138445 CTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTAAAA 138504
Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245
|| |||||| | |||||| |||||||| |||||||||||||||| ||| ||||||
Sbjct 138505 AGCCACCTACAGACGCTTTACGCCCAATAATTCCGGATAACGCTTGCATCCTCTGTATTA 138564
Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290
|||||||||||||||| ||||||||| ||||||||| ||| ||
Sbjct 138565 CCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATA 138609
>seq2194
Length=21910
Score = 167 bits (184), Expect = 4e-39
Identities = 208/285 (73%), Gaps = 0/285 (0%)
Strand=Plus/Minus
Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65
||||||| ||||| |||||| | | |||||| || |||||| |||||||| |
Sbjct 17999 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 17940
Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125
| || |||||||||||||||||| ||| | |||||| |||| || | | |||| ||
Sbjct 17939 CCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAG 17880
Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185
|||||| | || | ||||||||||| | ||| || | |||||
Sbjct 17879 CTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTAAAA 17820
Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245
|| |||||| | |||||| |||||||| |||||||||||||||| ||| ||||||
Sbjct 17819 AGCCACCTACAGACGCTTTACGCCCAATAATTCCGGATAACGCTTGCATCCTCTGTATTA 17760
Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290
|||||||||||||||| ||||||||| ||||||||| ||| ||
Sbjct 17759 CCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATA 17715
>seq1
Length=51465339
Score = 167 bits (184), Expect = 4e-39
Identities = 208/285 (73%), Gaps = 0/285 (0%)
Strand=Plus/Plus
Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65
||||||| ||||| |||||| | | |||||| || |||||| |||||||| |
Sbjct 12123794 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 12123853
Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125
| || |||||||||||||||||| ||| | |||||| |||| || | | |||| ||
Sbjct 12123854 CCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAG 12123913
Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185
|||||| | || | ||||||||||| | ||| || | |||||
Sbjct 12123914 CTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTAAAA 12123973
Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245
|| |||||| | |||||| |||||||| |||||||||||||||| ||| ||||||
Sbjct 12123974 AGCCACCTACAGACGCTTTACGCCCAATAATTCCGGATAACGCTTGCATCCTCTGTATTA 12124033
Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290
|||||||||||||||| ||||||||| ||||||||| ||| ||
Sbjct 12124034 CCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATA 12124078
Score = 89.7 bits (98), Expect = 9e-16
Identities = 64/74 (86%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 217 TCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGC 276
|||||||||||||||| ||| |||||||||||||||||||||| ||||||||| ||
Sbjct 16944998 TCCGGATAACGCTTGCATCCTCTGTATTACCGCGGCTGCTGGCACAGAGTTAGCCGATGC 16944939
Query 277 TTATTCCTCAGGTA 290
||||||| ||| ||
Sbjct 16944938 TTATTCCCCAGATA 16944925
>seq5
Length=41956025
Score = 152 bits (168), Expect = 9e-35
Identities = 182/247 (74%), Gaps = 0/247 (0%)
Strand=Plus/Plus
Query 44 GCCTTCGCCACTGGTGTTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCC 103
|| |||||| |||||||| | | || |||||||||||||||||| ||| | ||||||
Sbjct 32787566 GCTTTCGCCGTTGGTGTTCTTTCCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCC 32787625
Query 104 GATTGCCTCTCCAGCACTCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCAT 163
|||| || | | |||| || |||||| | || | |||||||||||
Sbjct 32787626 CTCTGCCCCTACCGTACTCCAGCTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTG 32787685
Query 164 AGTTTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGAT 223
| ||| || | ||||| || |||||| | |||||| |||||||| |||||||
Sbjct 32787686 GGATTTGACGGCGGACTTAAAAAGCCACCTACAGACGCTTTACGCCCAATAATTCCGGAT 32787745
Query 224 AACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCC 283
||||||||| ||| |||||||||||||||||||||| ||||||||| |||||||||
Sbjct 32787746 AACGCTTGCATCCTCTGTATTACCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCC 32787805
Query 284 TCAGGTA 290
||| ||
Sbjct 32787806 CCAGATA 32787812
Score = 95.1 bits (104), Expect = 2e-17
Identities = 146/207 (71%), Gaps = 1/207 (0%)
Strand=Plus/Minus
Query 44 GCCTTCGCCACTGGTGTTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCC 103
|| ||||||| |||||||| ||| || |||||||||||||| ||| ||| | |||| |
Sbjct 13614272 GCTTTCGCCATTGGTGTTCTTCCCGATCTCTACGCATTTCACTGCTCCACCAGAAATTTC 13614213
Query 104 GATTGCCTCTCCAGCACTCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCAT 163
|| | || | | |||| || |||||| | | | | | | |||||||||||
Sbjct 13614212 CTCTGTCCCTACCGTACTCCAGCTTGGTAGTTTCCACTCCTGTCGA-GGGTTGAGCCCTG 13614154
Query 164 AGTTTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGAT 223
| ||| || | |||| || |||||| | |||||| |||||||| ||| |||
Sbjct 13614153 GGATTTGACGGCGGACTCAAAAAGCCACCTACAGACGCTTTACGCCCAATAATTCCAGAT 13614094
Query 224 AACGCTTGCCACCTACGTATTACCGCG 250
|| |||||| ||| |||||||||||
Sbjct 13614093 AATGCTTGCATCCTCTGTATTACCGCG 13614067
>seq4826
Length=244980
Score = 143 bits (158), Expect = 4e-32
Identities = 206/289 (71%), Gaps = 10/289 (3%)
Strand=Plus/Plus
Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60
|||| |||||||| || ||||||| || |||| | | |||||||| ||| ||
Sbjct 125536 CCCATGCTTTCGCACCCCAGCGTCGGTAGGGACCCAGAGAGCTGCCTTCGCTTTTGGCGT 125595
Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120
|||| |||| |||| || |||||||| ||||||||| |||||| | ||||| |||
Sbjct 125596 TCCTTCGTAGATCTCCGGATTTCACCCCTACACACGAAATTCCACTCTCCTCTGTCTCAC 125655
Query 121 TCAAGAAAAACAGTTTCAAATGCAG---GCTA-TGGGTTGAGCCCATAGTTTTCACATCT 176
||||| || ||||| | ||| || | | ||| | | |||||| |
Sbjct 125656 TCAAGTGAATTGGTTTCGAGAGCATTCCGCAAGTTTTTTGCGAC------TTTCACTTTC 125709
Query 177 GACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACC 236
|| | | |||||||| ||||||||| |||| | | |||| | ||| |||||| ||
Sbjct 125710 AACCCGATTCACCGCCTACGTGCCCTTTACGCCCAGTCATTCCGAAGAACACTTGCCCCC 125769
Query 237 TACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285
||| |||||||||||||||||||| ||||||||| ||||| ||||||
Sbjct 125770 CCCGTCTTACCGCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTC 125818
>seq8
Length=31745509
Score = 98.7 bits (108), Expect = 2e-18
Identities = 78/94 (83%), Gaps = 0/94 (0%)
Strand=Plus/Plus
Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247
|| |||||| | |||||| |||||||| || |||||||||||| ||| ||||||||
Sbjct 29175078 CCACCTACAGACGCTTTACGCCCAATAATTCTAGATAACGCTTGCATCCTCTGTATTACC 29175137
Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATT 281
|||||||||||||| ||||||||| |||||||
Sbjct 29175138 GCGGCTGCTGGCACAGAGTTAGCCGATGCTTATT 29175171
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 828761252046
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |