Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq2698 129 6e-28 seq3328 127 2e-27 seq3 127 2e-27 >seq2698 Length=84112 Score = 129 bits (142), Expect = 6e-28 Identities = 143/187 (76%), Gaps = 3/187 (2%) Strand=Plus/Minus Query 5 CCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACAT 63 |||| || |||||||||| ||||||||| | |||||||| |||| |||| | |||||| Sbjct 51856 CCAGCGCTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACAT 51797 Query 64 TACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCG 123 || ||||| |||| | |||||| | |||| ||||| || || | ||| || | Sbjct 51796 TAGCATGGGATAACATCATAGGATTT-CGGTCCTATTACGTTGGCCTTCGGGATCGGA-G 51739 Query 124 TAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTG 183 ||||||| || | ||| ||||||||| | ||||| || |||| |||||||||||||| Sbjct 51738 TAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTG 51679 Query 184 GATTTAT 190 ||||||| Sbjct 51678 GATTTAT 51672 Score = 127 bits (140), Expect = 2e-27 Identities = 139/181 (77%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 71900 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 71841 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | |||| ||||| || || | ||| || ||||||| Sbjct 71840 GGGATAACATCATAGGATTT-CGGTCCTATTACGTTGGCCTTCGGGATCGGA-GTAATGA 71783 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 71782 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 71723 Query 190 T 190 | Sbjct 71722 T 71722 >seq3328 Length=34111 Score = 127 bits (140), Expect = 2e-27 Identities = 139/181 (77%), Gaps = 3/181 (2%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 6628 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 6687 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | |||| ||||| || || | ||| || ||||||| Sbjct 6688 GGGATAACATCATAGGATTT-CGGTCCTATTACGTTGGCCTTCGGGATCGGA-GTAATGA 6745 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 6746 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 6805 Query 190 T 190 | Sbjct 6806 T 6806 >seq3 Length=50312079 Score = 127 bits (140), Expect = 2e-27 Identities = 139/181 (77%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 35842499 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 35842440 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | |||| ||||| || || | ||| || ||||||| Sbjct 35842439 GGGATAACATCATAGGATTT-CGGTCCTATTACGTTGGCCTTCGGGATCGGA-GTAATGA 35842382 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 35842381 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 35842322 Query 190 T 190 | Sbjct 35842321 T 35842321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511976063040