Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20
2016-05-24] 4,826 sequences; 421,502,825 total letters
Query= AAMG01001962.1
Length=275
Score E
Sequences producing significant alignments: (Bits) Value
seq4825 268 1e-69
seq1 255 9e-66
seq4826 205 1e-50
seq1670 205 1e-50
seq7 205 1e-50
seq2 190 3e-46
seq4 134 2e-29
seq6 129 9e-28
seq1858 78.8 1e-12
>seq4825
Length=155848
Score = 268 bits (296), Expect = 1e-69
Identities = 224/273 (82%), Gaps = 1/273 (0%)
Strand=Plus/Minus
Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62
|| |||||| ||||||||| |||||| |||||| ||| |||| ||| ||||||
Sbjct 107674 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 107615
Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122
| | | | |||| | ||||||| |||||||||| |||| ||||||||||||||||||
Sbjct 107614 TTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 107555
Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182
| ||| || ||||||||| || |||||||| |||||| ||||||||||||||| ||
Sbjct 107554 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACG 107495
Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242
|||||||||||||||||| ||| || ||||||||||||||||||||||||||||| || |
Sbjct 107494 ACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACAT 107435
Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275
||| |||||||||| | || ||||||||||||
Sbjct 107434 ACTACAGCCCCAGGTGGCGAAGAGCCGACATCG 107402
Score = 268 bits (296), Expect = 1e-69
Identities = 224/273 (82%), Gaps = 1/273 (0%)
Strand=Plus/Plus
Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62
|| |||||| ||||||||| |||||| |||||| ||| |||| ||| ||||||
Sbjct 132367 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 132426
Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122
| | | | |||| | ||||||| |||||||||| |||| ||||||||||||||||||
Sbjct 132427 TTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 132486
Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182
| ||| || ||||||||| || |||||||| |||||| ||||||||||||||| ||
Sbjct 132487 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACG 132546
Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242
|||||||||||||||||| ||| || ||||||||||||||||||||||||||||| || |
Sbjct 132547 ACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACAT 132606
Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275
||| |||||||||| | || ||||||||||||
Sbjct 132607 ACTACAGCCCCAGGTGGCGAAGAGCCGACATCG 132639
>seq1
Length=51465339
Score = 255 bits (282), Expect = 9e-66
Identities = 221/273 (81%), Gaps = 1/273 (0%)
Strand=Plus/Plus
Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62
|| |||||| || |||||| ||||| |||| | ||| |||| ||| ||||||
Sbjct 16910016 GGTGGGCTTACTACTCAGATGCTTTCAGTAGTTATTCGCTCCGCACTTGGCTACCCAGCG 16910075
Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122
| | | | |||| | ||||||| |||||||||| |||| ||||||||||||||||||
Sbjct 16910076 TTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 16910135
Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182
| ||| || ||||||||| || |||||||| |||||| ||||||||||||||| ||
Sbjct 16910136 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACG 16910195
Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242
|||||||||||||||||| ||| || ||||||||||||||||||||||||||||| || |
Sbjct 16910196 ACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACAT 16910255
Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275
||| |||||||||| | || ||||||||||||
Sbjct 16910256 ACTACAGCCCCAGGTGGCGAAGAGCCGACATCG 16910288
Score = 107 bits (118), Expect = 3e-21
Identities = 120/159 (75%), Gaps = 1/159 (1%)
Strand=Plus/Minus
Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62
|| |||||| ||||||||| |||||| |||||| ||| |||| ||| ||||||
Sbjct 42864617 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 42864558
Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122
| | | | |||| | ||||| |||||||||| |||| ||||||||||||||||||
Sbjct 42864557 TTTACCGTGGGCACGATAACTGTAACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 42864498
Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGA 161
| ||| || ||||||||| || |||||||| ||||
Sbjct 42864497 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGA 42864459
>seq4826
Length=244980
Score = 205 bits (226), Expect = 1e-50
Identities = 196/251 (78%), Gaps = 4/251 (2%)
Strand=Plus/Plus
Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88
|||| || | || | | ||||||||| ||| || ||| |||||| ||||| ||| |
Sbjct 87396 CAGCAGTTCTTCCATACCAACTTAGCTGCCCGGCGCTGCTATTGGCATAACAACCGGTAC 87455
Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT- 147
|||| ||||| | ||| ||| |||||||||||||| || ||||||| || | |||
Sbjct 87456 ACCATAGGTTGGCCCAACCCAGTCCTCTCGTACTAGGGTTGGCTCCTCGCAGTTCTCCCT 87515
Query 148 ---ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGT 204
|| || ||| | |||||| ||||||||||||| ||||||||| |||||| ||| |||
Sbjct 87516 TTAACACCAACGGCAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGT 87575
Query 205 GCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACG 264
|| ||| ||| |||||||| || |||||||||||||| ||||| |||||||||| || |
Sbjct 87576 ACCACTTGAATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATG 87635
Query 265 AGCCGACATCG 275
|| ||||||||
Sbjct 87636 AGTCGACATCG 87646
Score = 93.3 bits (102), Expect = 7e-17
Identities = 71/84 (85%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 192 ACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCC 251
||||| ||| ||| || ||| ||| |||||||| || |||||||||||||| ||||| ||
Sbjct 215991 ACCCAACTCACGTACCACTTGAATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACC 215932
Query 252 CCAGGATGAGACGAGCCGACATCG 275
|||||||| || ||| ||||||||
Sbjct 215931 CCAGGATGTGATGAGTCGACATCG 215908
>seq1670
Length=24701
Score = 205 bits (226), Expect = 1e-50
Identities = 196/251 (78%), Gaps = 4/251 (2%)
Strand=Plus/Minus
Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88
|||| || | || | | ||||||||| ||| || ||| |||||| ||||| ||| |
Sbjct 23706 CAGCAGTTCTTCCATACCAACTTAGCTGCCCGGCGCTGCTATTGGCATAACAACCGGTAC 23647
Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT- 147
|||| ||||| | ||| ||| |||||||||||||| || ||||||| || | |||
Sbjct 23646 ACCATAGGTTGGCCCAACCCAGTCCTCTCGTACTAGGGTTGGCTCCTCGCAGTTCTCCCT 23587
Query 148 ---ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGT 204
|| || ||| | |||||| ||||||||||||| ||||||||| |||||| ||| |||
Sbjct 23586 TTAACACCAACGGCAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGT 23527
Query 205 GCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACG 264
|| ||| ||| |||||||| || |||||||||||||| ||||| |||||||||| || |
Sbjct 23526 ACCACTTGAATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATG 23467
Query 265 AGCCGACATCG 275
|| ||||||||
Sbjct 23466 AGTCGACATCG 23456
>seq7
Length=36358036
Score = 205 bits (226), Expect = 1e-50
Identities = 196/251 (78%), Gaps = 4/251 (2%)
Strand=Plus/Minus
Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88
|||| || | || | | ||||||||| ||| || ||| |||||| ||||| ||| |
Sbjct 11508830 CAGCAGTTCTTCCATACCAACTTAGCTGCCCGGCGCTGCTATTGGCATAACAACCGGTAC 11508771
Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT- 147
|||| ||||| | ||| ||| |||||||||||||| || ||||||| || | |||
Sbjct 11508770 ACCATAGGTTGGCCCAACCCAGTCCTCTCGTACTAGGGTTGGCTCCTCGCAGTTCTCCCT 11508711
Query 148 ---ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGT 204
|| || ||| | |||||| ||||||||||||| ||||||||| |||||| ||| |||
Sbjct 11508710 TTAACACCAACGGCAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGT 11508651
Query 205 GCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACG 264
|| ||| ||| |||||||| || |||||||||||||| ||||| |||||||||| || |
Sbjct 11508650 ACCACTTGAATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATG 11508591
Query 265 AGCCGACATCG 275
|| ||||||||
Sbjct 11508590 AGTCGACATCG 11508580
>seq2
Length=43913520
Score = 190 bits (210), Expect = 3e-46
Identities = 147/172 (85%), Gaps = 2/172 (1%)
Strand=Plus/Plus
Query 105 TCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAG 164
|||||| |||||||||||| ||| | ||||||||| || |||||||| ||||||
Sbjct 11462398 TCCCGGACCTCTCGTACTAGGGAAATGTCCTCTCAATGCTCTAACGCCCACACCGGATAT 11462457
Query 165 GGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACA 224
|||||||||||||| |||| ||||||||||||||| ||| || ||||||||||||||||
Sbjct 11462458 GGACCGAACTGTCTTACGACATTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACA 11462517
Query 225 GCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGA-GACGAGCCGACATCG 275
||||||||||||| || |||| |||||||||| ||| || ||||||||||||
Sbjct 11462518 GCCCAACCCTTGGAACATACTACAGCCCCAGG-TGACGAAGAGCCGACATCG 11462568
Score = 111 bits (122), Expect = 2e-22
Identities = 108/138 (78%), Gaps = 1/138 (1%)
Strand=Plus/Plus
Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62
|| |||||| | ||||||||| ||||| |||||| ||| |||| ||| ||||||
Sbjct 24380296 GGTGGGCTTAAGACTTAGATGCTATCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 24380355
Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122
| | | | |||| | ||||||| |||||||||| |||| ||||||||||||||||||
Sbjct 24380356 TTTACCGTGGGCATGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 24380415
Query 123 AAGGACAGCTCCTCTCAA 140
| ||| || |||||||||
Sbjct 24380416 AGGGAAAGGTCCTCTCAA 24380433
>seq4
Length=35924511
Score = 134 bits (148), Expect = 2e-29
Identities = 135/174 (78%), Gaps = 1/174 (1%)
Strand=Plus/Minus
Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62
|| |||||| ||||||||| |||||| |||||| ||| |||| ||| ||||||
Sbjct 17070438 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 17070379
Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122
| | | | |||| | ||||||| ||||| |||| |||| ||||||||||||||||||
Sbjct 17070378 TTTACCGTGGGCACGATAACTGGTACACCAAAGGTGCGTCCTTCCCGGTCCTCTCGTACT 17070319
Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGT 176
| ||| || ||||||||| || |||||||| |||||| ||||||||||||
Sbjct 17070318 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGT 17070265
>seq6
Length=36610139
Score = 129 bits (142), Expect = 9e-28
Identities = 95/111 (86%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 165 GGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACA 224
|||| |||||||||| |||| ||||||||||||||| ||| || ||||||| ||||||||
Sbjct 920510 GGACTGAACTGTCTCACGACATTCTGAACCCAGCTCACGTACCGCTTTAATAGGCGAACA 920451
Query 225 GCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275
||| ||||||||| || |||| ||||||||| | || ||||||||||||
Sbjct 920450 GCCTAACCCTTGGAACATACTATAGCCCCAGGTGGCGAAGAGCCGACATCG 920400
>seq1858
Length=361000
Score = 78.8 bits (86), Expect = 1e-12
Identities = 61/73 (84%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 201 GCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGA 260
|||| || |||||||||||||| |||||||||||||| || ||| |||||||||| |
Sbjct 307549 GCGTACCGCTTTAATGGGCGAATAGCCCAACCCTTGGAACATACGACAGCCCCAGGTGGC 307490
Query 261 GACGAGCCGACAT 273
|| ||||||| ||
Sbjct 307489 GAAGAGCCGATAT 307477
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 780763496136
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