Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq4825 268 1e-69 seq1 255 9e-66 seq4826 205 1e-50 seq1670 205 1e-50 seq7 205 1e-50 seq2 190 3e-46 seq4 134 2e-29 seq6 129 9e-28 seq1858 78.8 1e-12 >seq4825 Length=155848 Score = 268 bits (296), Expect = 1e-69 Identities = 224/273 (82%), Gaps = 1/273 (0%) Strand=Plus/Minus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| ||||||||| |||||| |||||| ||| |||| ||| |||||| Sbjct 107674 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 107615 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| |||||||||| |||| |||||||||||||||||| Sbjct 107614 TTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 107555 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || |||||||| |||||| ||||||||||||||| || Sbjct 107554 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACG 107495 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||||||||| ||| || ||||||||||||||||||||||||||||| || | Sbjct 107494 ACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACAT 107435 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| |||||||||| | || |||||||||||| Sbjct 107434 ACTACAGCCCCAGGTGGCGAAGAGCCGACATCG 107402 Score = 268 bits (296), Expect = 1e-69 Identities = 224/273 (82%), Gaps = 1/273 (0%) Strand=Plus/Plus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| ||||||||| |||||| |||||| ||| |||| ||| |||||| Sbjct 132367 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 132426 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| |||||||||| |||| |||||||||||||||||| Sbjct 132427 TTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 132486 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || |||||||| |||||| ||||||||||||||| || Sbjct 132487 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACG 132546 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||||||||| ||| || ||||||||||||||||||||||||||||| || | Sbjct 132547 ACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACAT 132606 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| |||||||||| | || |||||||||||| Sbjct 132607 ACTACAGCCCCAGGTGGCGAAGAGCCGACATCG 132639 >seq1 Length=51465339 Score = 255 bits (282), Expect = 9e-66 Identities = 221/273 (81%), Gaps = 1/273 (0%) Strand=Plus/Plus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| || |||||| ||||| |||| | ||| |||| ||| |||||| Sbjct 16910016 GGTGGGCTTACTACTCAGATGCTTTCAGTAGTTATTCGCTCCGCACTTGGCTACCCAGCG 16910075 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| |||||||||| |||| |||||||||||||||||| Sbjct 16910076 TTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 16910135 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || |||||||| |||||| ||||||||||||||| || Sbjct 16910136 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACG 16910195 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||||||||| ||| || ||||||||||||||||||||||||||||| || | Sbjct 16910196 ACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACAT 16910255 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| |||||||||| | || |||||||||||| Sbjct 16910256 ACTACAGCCCCAGGTGGCGAAGAGCCGACATCG 16910288 Score = 107 bits (118), Expect = 3e-21 Identities = 120/159 (75%), Gaps = 1/159 (1%) Strand=Plus/Minus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| ||||||||| |||||| |||||| ||| |||| ||| |||||| Sbjct 42864617 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 42864558 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||| |||||||||| |||| |||||||||||||||||| Sbjct 42864557 TTTACCGTGGGCACGATAACTGTAACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 42864498 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGA 161 | ||| || ||||||||| || |||||||| |||| Sbjct 42864497 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGA 42864459 >seq4826 Length=244980 Score = 205 bits (226), Expect = 1e-50 Identities = 196/251 (78%), Gaps = 4/251 (2%) Strand=Plus/Plus Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88 |||| || | || | | ||||||||| ||| || ||| |||||| ||||| ||| | Sbjct 87396 CAGCAGTTCTTCCATACCAACTTAGCTGCCCGGCGCTGCTATTGGCATAACAACCGGTAC 87455 Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT- 147 |||| ||||| | ||| ||| |||||||||||||| || ||||||| || | ||| Sbjct 87456 ACCATAGGTTGGCCCAACCCAGTCCTCTCGTACTAGGGTTGGCTCCTCGCAGTTCTCCCT 87515 Query 148 ---ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGT 204 || || ||| | |||||| ||||||||||||| ||||||||| |||||| ||| ||| Sbjct 87516 TTAACACCAACGGCAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGT 87575 Query 205 GCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACG 264 || ||| ||| |||||||| || |||||||||||||| ||||| |||||||||| || | Sbjct 87576 ACCACTTGAATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATG 87635 Query 265 AGCCGACATCG 275 || |||||||| Sbjct 87636 AGTCGACATCG 87646 Score = 93.3 bits (102), Expect = 7e-17 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 192 ACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCC 251 ||||| ||| ||| || ||| ||| |||||||| || |||||||||||||| ||||| || Sbjct 215991 ACCCAACTCACGTACCACTTGAATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACC 215932 Query 252 CCAGGATGAGACGAGCCGACATCG 275 |||||||| || ||| |||||||| Sbjct 215931 CCAGGATGTGATGAGTCGACATCG 215908 >seq1670 Length=24701 Score = 205 bits (226), Expect = 1e-50 Identities = 196/251 (78%), Gaps = 4/251 (2%) Strand=Plus/Minus Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88 |||| || | || | | ||||||||| ||| || ||| |||||| ||||| ||| | Sbjct 23706 CAGCAGTTCTTCCATACCAACTTAGCTGCCCGGCGCTGCTATTGGCATAACAACCGGTAC 23647 Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT- 147 |||| ||||| | ||| ||| |||||||||||||| || ||||||| || | ||| Sbjct 23646 ACCATAGGTTGGCCCAACCCAGTCCTCTCGTACTAGGGTTGGCTCCTCGCAGTTCTCCCT 23587 Query 148 ---ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGT 204 || || ||| | |||||| ||||||||||||| ||||||||| |||||| ||| ||| Sbjct 23586 TTAACACCAACGGCAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGT 23527 Query 205 GCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACG 264 || ||| ||| |||||||| || |||||||||||||| ||||| |||||||||| || | Sbjct 23526 ACCACTTGAATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATG 23467 Query 265 AGCCGACATCG 275 || |||||||| Sbjct 23466 AGTCGACATCG 23456 >seq7 Length=36358036 Score = 205 bits (226), Expect = 1e-50 Identities = 196/251 (78%), Gaps = 4/251 (2%) Strand=Plus/Minus Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88 |||| || | || | | ||||||||| ||| || ||| |||||| ||||| ||| | Sbjct 11508830 CAGCAGTTCTTCCATACCAACTTAGCTGCCCGGCGCTGCTATTGGCATAACAACCGGTAC 11508771 Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT- 147 |||| ||||| | ||| ||| |||||||||||||| || ||||||| || | ||| Sbjct 11508770 ACCATAGGTTGGCCCAACCCAGTCCTCTCGTACTAGGGTTGGCTCCTCGCAGTTCTCCCT 11508711 Query 148 ---ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGT 204 || || ||| | |||||| ||||||||||||| ||||||||| |||||| ||| ||| Sbjct 11508710 TTAACACCAACGGCAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGT 11508651 Query 205 GCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACG 264 || ||| ||| |||||||| || |||||||||||||| ||||| |||||||||| || | Sbjct 11508650 ACCACTTGAATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATG 11508591 Query 265 AGCCGACATCG 275 || |||||||| Sbjct 11508590 AGTCGACATCG 11508580 >seq2 Length=43913520 Score = 190 bits (210), Expect = 3e-46 Identities = 147/172 (85%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 105 TCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAG 164 |||||| |||||||||||| ||| | ||||||||| || |||||||| |||||| Sbjct 11462398 TCCCGGACCTCTCGTACTAGGGAAATGTCCTCTCAATGCTCTAACGCCCACACCGGATAT 11462457 Query 165 GGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACA 224 |||||||||||||| |||| ||||||||||||||| ||| || |||||||||||||||| Sbjct 11462458 GGACCGAACTGTCTTACGACATTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACA 11462517 Query 225 GCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGA-GACGAGCCGACATCG 275 ||||||||||||| || |||| |||||||||| ||| || |||||||||||| Sbjct 11462518 GCCCAACCCTTGGAACATACTACAGCCCCAGG-TGACGAAGAGCCGACATCG 11462568 Score = 111 bits (122), Expect = 2e-22 Identities = 108/138 (78%), Gaps = 1/138 (1%) Strand=Plus/Plus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| | ||||||||| ||||| |||||| ||| |||| ||| |||||| Sbjct 24380296 GGTGGGCTTAAGACTTAGATGCTATCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 24380355 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| |||||||||| |||| |||||||||||||||||| Sbjct 24380356 TTTACCGTGGGCATGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 24380415 Query 123 AAGGACAGCTCCTCTCAA 140 | ||| || ||||||||| Sbjct 24380416 AGGGAAAGGTCCTCTCAA 24380433 >seq4 Length=35924511 Score = 134 bits (148), Expect = 2e-29 Identities = 135/174 (78%), Gaps = 1/174 (1%) Strand=Plus/Minus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| ||||||||| |||||| |||||| ||| |||| ||| |||||| Sbjct 17070438 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 17070379 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| ||||| |||| |||| |||||||||||||||||| Sbjct 17070378 TTTACCGTGGGCACGATAACTGGTACACCAAAGGTGCGTCCTTCCCGGTCCTCTCGTACT 17070319 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGT 176 | ||| || ||||||||| || |||||||| |||||| |||||||||||| Sbjct 17070318 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGT 17070265 >seq6 Length=36610139 Score = 129 bits (142), Expect = 9e-28 Identities = 95/111 (86%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 165 GGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACA 224 |||| |||||||||| |||| ||||||||||||||| ||| || ||||||| |||||||| Sbjct 920510 GGACTGAACTGTCTCACGACATTCTGAACCCAGCTCACGTACCGCTTTAATAGGCGAACA 920451 Query 225 GCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| ||||||||| || |||| ||||||||| | || |||||||||||| Sbjct 920450 GCCTAACCCTTGGAACATACTATAGCCCCAGGTGGCGAAGAGCCGACATCG 920400 >seq1858 Length=361000 Score = 78.8 bits (86), Expect = 1e-12 Identities = 61/73 (84%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 201 GCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGA 260 |||| || |||||||||||||| |||||||||||||| || ||| |||||||||| | Sbjct 307549 GCGTACCGCTTTAATGGGCGAATAGCCCAACCCTTGGAACATACGACAGCCCCAGGTGGC 307490 Query 261 GACGAGCCGACAT 273 || ||||||| || Sbjct 307489 GAAGAGCCGATAT 307477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780763496136