Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20
2016-05-24] 4,826 sequences; 421,502,825 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq3328 297 4e-78
seq2698 297 4e-78
seq3 297 4e-78
seq4226 271 1e-70
seq4256 187 5e-45
seq5 138 2e-30
seq4344 96.9 7e-18
>seq3328
Length=34111
Score = 297 bits (328), Expect = 4e-78
Identities = 257/316 (81%), Gaps = 12/316 (4%)
Strand=Plus/Plus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCA------GGCCCGCTTTGGCGGGTCGCCGGCT 73
|| |||||||| | |||||||| |||| | || | | || ||| || |||
Sbjct 7210 GAACGAGACCTCAGCCTGCTAACTAGCTATGTGGAGGTACACCTTCACGG----CCAGCT 7265
Query 74 TCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGAT 132
||||||||||||||| | || || | | ||||||||||||||||||||||||||||||
Sbjct 7266 TCTTAGAGGGACTATGGCCTTTTAGGCCACGGAAGTTTGAGGCAATAACAGGTCTGTGAT 7325
Query 133 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACC 192
|||||||||||||||||||||||||||||||||||||| | |||||||| || ||
Sbjct 7326 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAGCC 7385
Query 193 TTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCA 252
||||||| ||| | ||| |||||| | ||| | ||||| |||||||||| |||||||
Sbjct 7386 TTGGCCGACAGGCCCGGGAAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTGCA 7444
Query 253 ATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTAC 312
||| ||| |||| |||||||||| ||||||||||||| ||||||||| |||||||| |||
Sbjct 7445 ATTGTTGGTCTTAAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTAC 7504
Query 313 GTCCCTGCCCTTTGTA 328
||||||||||||||||
Sbjct 7505 GTCCCTGCCCTTTGTA 7520
>seq2698
Length=84112
Score = 297 bits (328), Expect = 4e-78
Identities = 225/263 (86%), Gaps = 2/263 (1%)
Strand=Plus/Minus
Query 67 GCCGGCTTCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGT 125
||| |||||||||||||||||| | || || | | |||||||||||||||||||||||
Sbjct 71269 GCCAGCTTCTTAGAGGGACTATGGCCTTTTAGGCCACGGAAGTTTGAGGCAATAACAGGT 71210
Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 71209 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTC 71150
Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245
|| ||||||||| ||| | ||| |||||| | ||| | ||||| ||||||||||
Sbjct 71149 TATAGCCTTGGCCGACAGGCCCGGGAAATCTT-TGAAATTTCATCGTGATGGGGATAGAT 71091
Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305
|||||||||| ||| |||| |||||||||| ||||||||||||| ||||||||| |||||
Sbjct 71090 CATTGCAATTGTTGGTCTTAAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGT 71031
Query 306 TGATTACGTCCCTGCCCTTTGTA 328
||| |||||||||||||||||||
Sbjct 71030 TGACTACGTCCCTGCCCTTTGTA 71008
Score = 293 bits (324), Expect = 4e-77
Identities = 256/316 (81%), Gaps = 12/316 (4%)
Strand=Plus/Minus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCA------GGCCCGCTTTGGCGGGTCGCCGGCT 73
|| |||||||| | |||||||| |||| | || | | || ||| || |||
Sbjct 51268 GAACGAGACCTCAGCCTGCTAACTAGCTATGTGGAGGTACACCTTCACGG----CCAGCT 51213
Query 74 TCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGAT 132
||||||||||||||| | || || | | ||||||||||||||||||||||||||||||
Sbjct 51212 TCTTAGAGGGACTATGGCCTTTTAGGCCACGGAAGTTTGAGGCAATAACAGGTCTGTGAT 51153
Query 133 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACC 192
|||||||||||||||||||||||||||||||||||||| | |||||||| || ||
Sbjct 51152 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAGCC 51093
Query 193 TTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCA 252
||||||| ||| | ||| |||||| | ||| | ||||| |||||||||| |||| ||
Sbjct 51092 TTGGCCGACAGGCCCGGGAAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTACA 51034
Query 253 ATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTAC 312
||| ||| |||| |||||||||| ||||||||||||| ||||||||| |||||||| |||
Sbjct 51033 ATTGTTGGTCTTAAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTAC 50974
Query 313 GTCCCTGCCCTTTGTA 328
||||||||||||||||
Sbjct 50973 GTCCCTGCCCTTTGTA 50958
>seq3
Length=50312079
Score = 297 bits (328), Expect = 4e-78
Identities = 257/316 (81%), Gaps = 12/316 (4%)
Strand=Plus/Minus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCA------GGCCCGCTTTGGCGGGTCGCCGGCT 73
|| |||||||| | |||||||| |||| | || | | || ||| || |||
Sbjct 35841917 GAACGAGACCTCAGCCTGCTAACTAGCTATGTGGAGGTACACCTTCACGG----CCAGCT 35841862
Query 74 TCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGAT 132
||||||||||||||| | || || | | ||||||||||||||||||||||||||||||
Sbjct 35841861 TCTTAGAGGGACTATGGCCTTTTAGGCCACGGAAGTTTGAGGCAATAACAGGTCTGTGAT 35841802
Query 133 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACC 192
|||||||||||||||||||||||||||||||||||||| | |||||||| || ||
Sbjct 35841801 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAGCC 35841742
Query 193 TTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCA 252
||||||| ||| | ||| |||||| | ||| | ||||| |||||||||| |||||||
Sbjct 35841741 TTGGCCGACAGGCCCGGGAAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTGCA 35841683
Query 253 ATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTAC 312
||| ||| |||| |||||||||| ||||||||||||| ||||||||| |||||||| |||
Sbjct 35841682 ATTGTTGGTCTTAAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTAC 35841623
Query 313 GTCCCTGCCCTTTGTA 328
||||||||||||||||
Sbjct 35841622 GTCCCTGCCCTTTGTA 35841607
Score = 152 bits (168), Expect = 1e-34
Identities = 169/223 (76%), Gaps = 2/223 (1%)
Strand=Plus/Plus
Query 104 GAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCT 163
||||||||||| ||||||||||||||||| | || |||||||||||||||||||| |
Sbjct 112343 GAAGTTTGAGGTAATAACAGGTCTGTGATAGTCGTAAATGTTCTGGGCCGCACGCGCATT 112402
Query 164 ACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAA 223
||||||| | ||||||| || ||| | ||||| || |||||| | |||
Sbjct 112403 ACACTGATGTATTTAACGAGTCTATAGTGTTGATCAACAGGTCCGGAAAATCTT-TGAAA 112461
Query 224 CTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTA 283
| ||||| | |||||||| |||||||||| ||| |||| || ||||||| || |||
Sbjct 112462 TTTCATCGTGATAGGGATAGATCATTGCAATTGTTGATCTTAAATGAGGAATTTCTGGTA 112521
Query 284 AGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTG 326
| | || ||||| | | ||||||| ||| | |||||||||||
Sbjct 112522 AACACGAGTCATTAACCTGCGTTGACTACAT-CCTGCCCTTTG 112563
>seq4226
Length=17910
Score = 271 bits (300), Expect = 1e-70
Identities = 218/258 (84%), Gaps = 4/258 (2%)
Strand=Plus/Minus
Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| ||||| | ||||| || | ||||| ||||||||||||||||
Sbjct 17507 CTTCTTAGAGGGACAGGCGGCTTCTAGCCGCACGA-GATTGAG-CAATAACAGGTCTGTG 17450
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|||||||||||||||||||||||||||||||||||||||| | |||||||| ||
Sbjct 17449 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAG 17390
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
||||||||| ||| | ||| |||||| | ||| | ||||| |||||||||| |||||
Sbjct 17389 CCTTGGCCGACAGGCCCGGGAAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTG 17331
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310
||||| ||| |||| |||||||||| ||||||||||||| ||||||||| |||||||| |
Sbjct 17330 CAATTGTTGGTCTTAAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACT 17271
Query 311 ACGTCCCTGCCCTTTGTA 328
||||||||||||||||||
Sbjct 17270 ACGTCCCTGCCCTTTGTA 17253
Score = 219 bits (242), Expect = 8e-55
Identities = 206/258 (80%), Gaps = 6/258 (2%)
Strand=Plus/Minus
Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| ||||| | ||||| || | ||||| ||||||||||||||||
Sbjct 5778 CTTCTTAGAGGGACAGGCGGCTTCTAGCCGCACGA-GATTGAG-CAATAACAGGTCTGTG 5721
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|||||||||||||||||||||||||||||||||||| ||| | || || || |
Sbjct 5720 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACAATGAAGGTATCAGCGTGTCCT--- 5664
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
|| |||||| |||||| |||||| | | |||| | ||||||| ||||| | | |||
Sbjct 5663 CCCTGGCCGAAAGGTCCGGGTAACCCGCTGAAACACCTTCGTGCTTGGGATTGGGGCTTG 5604
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310
|||| || | | | |||||||||| || ||||| ||||||||| ||||||| ||||||
Sbjct 5603 AAATTGTTCCCCATGAACGAGGAATTCCCAGTAAAGGCGTGTCATTAGCACGCCTTGATT 5544
Query 311 ACGTCCCTGCCCTTTGTA 328
||||||||||||||||||
Sbjct 5543 ACGTCCCTGCCCTTTGTA 5526
>seq4256
Length=20900
Score = 187 bits (206), Expect = 5e-45
Identities = 199/261 (76%), Gaps = 4/261 (2%)
Strand=Plus/Minus
Query 72 CTTCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAG-GCAATAACAGGTCTGTG 130
|||||||||||||| | |||| | || | | | | || |||||||||||||||||
Sbjct 20396 CTTCTTAGAGGGACAAGCGGCGCTCGCAGCCGCACGAAACAGAGCAATAACAGGTCTGTG 20337
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCA--- 187
|||||||||||||| | |||||||||||| |||||||||| | || || | |
Sbjct 20336 ATGCCCTTAGATGTCCGGGGCCGCACGCGTGCTACACTGAAGTGGTCATCGTGCATACTG 20277
Query 188 TCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCA 247
| ||| ||| |||| ||||||| | | || | | ||||| ||||||| | |||
Sbjct 20276 TTTCCTGCTCCGAAAGGAGTGGGTAACCGCTTGAACCCATTTCGTGATGGGGATTGGGCA 20217
Query 248 TTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTG 307
||| ||||||||| | | |||||||||| || |||||||| | ||||| ||| ||||||
Sbjct 20216 TTGTAATTATTGCCCATGAACGAGGAATTCCCAGTAAGCGTGAGTCATTAGCTTGCGTTG 20157
Query 308 ATTACGTCCCTGCCCTTTGTA 328
|||||||||||||||||||||
Sbjct 20156 ATTACGTCCCTGCCCTTTGTA 20136
>seq5
Length=41956025
Score = 138 bits (152), Expect = 2e-30
Identities = 90/99 (91%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 230 CGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCG 289
|||| |||||||||| |||||||||| ||| |||| |||||||||| |||||||||||||
Sbjct 17352362 CGTGATGGGGATAGATCATTGCAATTGTTGGTCTTAAACGAGGAATTCCTAGTAAGCGCG 17352303
Query 290 TGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
||||||||| |||||||| |||||||||||||||||||
Sbjct 17352302 AGTCATCAGCTCGCGTTGACTACGTCCCTGCCCTTTGTA 17352264
>seq4344
Length=2483
Score = 96.9 bits (106), Expect = 7e-18
Identities = 59/63 (94%), Gaps = 0/63 (0%)
Strand=Plus/Minus
Query 266 AACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTT 325
|||||||||| ||||||||||||| ||||||||| |||||||| ||||||||||||||||
Sbjct 2481 AACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGAATACGTCCCTGCCCTTT 2422
Query 326 GTA 328
|||
Sbjct 2421 GTA 2419
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 947154288128
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |