Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq3328 297 4e-78 seq2698 297 4e-78 seq3 297 4e-78 seq4226 271 1e-70 seq4256 187 5e-45 seq5 138 2e-30 seq4344 96.9 7e-18 >seq3328 Length=34111 Score = 297 bits (328), Expect = 4e-78 Identities = 257/316 (81%), Gaps = 12/316 (4%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCA------GGCCCGCTTTGGCGGGTCGCCGGCT 73 || |||||||| | |||||||| |||| | || | | || ||| || ||| Sbjct 7210 GAACGAGACCTCAGCCTGCTAACTAGCTATGTGGAGGTACACCTTCACGG----CCAGCT 7265 Query 74 TCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGAT 132 ||||||||||||||| | || || | | |||||||||||||||||||||||||||||| Sbjct 7266 TCTTAGAGGGACTATGGCCTTTTAGGCCACGGAAGTTTGAGGCAATAACAGGTCTGTGAT 7325 Query 133 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACC 192 |||||||||||||||||||||||||||||||||||||| | |||||||| || || Sbjct 7326 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAGCC 7385 Query 193 TTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCA 252 ||||||| ||| | ||| |||||| | ||| | ||||| |||||||||| ||||||| Sbjct 7386 TTGGCCGACAGGCCCGGGAAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTGCA 7444 Query 253 ATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTAC 312 ||| ||| |||| |||||||||| ||||||||||||| ||||||||| |||||||| ||| Sbjct 7445 ATTGTTGGTCTTAAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTAC 7504 Query 313 GTCCCTGCCCTTTGTA 328 |||||||||||||||| Sbjct 7505 GTCCCTGCCCTTTGTA 7520 >seq2698 Length=84112 Score = 297 bits (328), Expect = 4e-78 Identities = 225/263 (86%), Gaps = 2/263 (1%) Strand=Plus/Minus Query 67 GCCGGCTTCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGT 125 ||| |||||||||||||||||| | || || | | ||||||||||||||||||||||| Sbjct 71269 GCCAGCTTCTTAGAGGGACTATGGCCTTTTAGGCCACGGAAGTTTGAGGCAATAACAGGT 71210 Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185 ||||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 71209 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTC 71150 Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245 || ||||||||| ||| | ||| |||||| | ||| | ||||| |||||||||| Sbjct 71149 TATAGCCTTGGCCGACAGGCCCGGGAAATCTT-TGAAATTTCATCGTGATGGGGATAGAT 71091 Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305 |||||||||| ||| |||| |||||||||| ||||||||||||| ||||||||| ||||| Sbjct 71090 CATTGCAATTGTTGGTCTTAAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGT 71031 Query 306 TGATTACGTCCCTGCCCTTTGTA 328 ||| ||||||||||||||||||| Sbjct 71030 TGACTACGTCCCTGCCCTTTGTA 71008 Score = 293 bits (324), Expect = 4e-77 Identities = 256/316 (81%), Gaps = 12/316 (4%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCA------GGCCCGCTTTGGCGGGTCGCCGGCT 73 || |||||||| | |||||||| |||| | || | | || ||| || ||| Sbjct 51268 GAACGAGACCTCAGCCTGCTAACTAGCTATGTGGAGGTACACCTTCACGG----CCAGCT 51213 Query 74 TCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGAT 132 ||||||||||||||| | || || | | |||||||||||||||||||||||||||||| Sbjct 51212 TCTTAGAGGGACTATGGCCTTTTAGGCCACGGAAGTTTGAGGCAATAACAGGTCTGTGAT 51153 Query 133 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACC 192 |||||||||||||||||||||||||||||||||||||| | |||||||| || || Sbjct 51152 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAGCC 51093 Query 193 TTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCA 252 ||||||| ||| | ||| |||||| | ||| | ||||| |||||||||| |||| || Sbjct 51092 TTGGCCGACAGGCCCGGGAAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTACA 51034 Query 253 ATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTAC 312 ||| ||| |||| |||||||||| ||||||||||||| ||||||||| |||||||| ||| Sbjct 51033 ATTGTTGGTCTTAAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTAC 50974 Query 313 GTCCCTGCCCTTTGTA 328 |||||||||||||||| Sbjct 50973 GTCCCTGCCCTTTGTA 50958 >seq3 Length=50312079 Score = 297 bits (328), Expect = 4e-78 Identities = 257/316 (81%), Gaps = 12/316 (4%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCA------GGCCCGCTTTGGCGGGTCGCCGGCT 73 || |||||||| | |||||||| |||| | || | | || ||| || ||| Sbjct 35841917 GAACGAGACCTCAGCCTGCTAACTAGCTATGTGGAGGTACACCTTCACGG----CCAGCT 35841862 Query 74 TCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGAT 132 ||||||||||||||| | || || | | |||||||||||||||||||||||||||||| Sbjct 35841861 TCTTAGAGGGACTATGGCCTTTTAGGCCACGGAAGTTTGAGGCAATAACAGGTCTGTGAT 35841802 Query 133 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACC 192 |||||||||||||||||||||||||||||||||||||| | |||||||| || || Sbjct 35841801 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAGCC 35841742 Query 193 TTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCA 252 ||||||| ||| | ||| |||||| | ||| | ||||| |||||||||| ||||||| Sbjct 35841741 TTGGCCGACAGGCCCGGGAAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTGCA 35841683 Query 253 ATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTAC 312 ||| ||| |||| |||||||||| ||||||||||||| ||||||||| |||||||| ||| Sbjct 35841682 ATTGTTGGTCTTAAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTAC 35841623 Query 313 GTCCCTGCCCTTTGTA 328 |||||||||||||||| Sbjct 35841622 GTCCCTGCCCTTTGTA 35841607 Score = 152 bits (168), Expect = 1e-34 Identities = 169/223 (76%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 104 GAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCT 163 ||||||||||| ||||||||||||||||| | || |||||||||||||||||||| | Sbjct 112343 GAAGTTTGAGGTAATAACAGGTCTGTGATAGTCGTAAATGTTCTGGGCCGCACGCGCATT 112402 Query 164 ACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAA 223 ||||||| | ||||||| || ||| | ||||| || |||||| | ||| Sbjct 112403 ACACTGATGTATTTAACGAGTCTATAGTGTTGATCAACAGGTCCGGAAAATCTT-TGAAA 112461 Query 224 CTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTA 283 | ||||| | |||||||| |||||||||| ||| |||| || ||||||| || ||| Sbjct 112462 TTTCATCGTGATAGGGATAGATCATTGCAATTGTTGATCTTAAATGAGGAATTTCTGGTA 112521 Query 284 AGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTG 326 | | || ||||| | | ||||||| ||| | ||||||||||| Sbjct 112522 AACACGAGTCATTAACCTGCGTTGACTACAT-CCTGCCCTTTG 112563 >seq4226 Length=17910 Score = 271 bits (300), Expect = 1e-70 Identities = 218/258 (84%), Gaps = 4/258 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| ||||| | ||||| || | ||||| |||||||||||||||| Sbjct 17507 CTTCTTAGAGGGACAGGCGGCTTCTAGCCGCACGA-GATTGAG-CAATAACAGGTCTGTG 17450 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||||||||||||||||||||||||||||| | |||||||| || Sbjct 17449 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAG 17390 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||||||||| ||| | ||| |||||| | ||| | ||||| |||||||||| ||||| Sbjct 17389 CCTTGGCCGACAGGCCCGGGAAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTG 17331 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||| ||| |||| |||||||||| ||||||||||||| ||||||||| |||||||| | Sbjct 17330 CAATTGTTGGTCTTAAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACT 17271 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 17270 ACGTCCCTGCCCTTTGTA 17253 Score = 219 bits (242), Expect = 8e-55 Identities = 206/258 (80%), Gaps = 6/258 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| ||||| | ||||| || | ||||| |||||||||||||||| Sbjct 5778 CTTCTTAGAGGGACAGGCGGCTTCTAGCCGCACGA-GATTGAG-CAATAACAGGTCTGTG 5721 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||||||||||||||||||||||||| ||| | || || || | Sbjct 5720 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACAATGAAGGTATCAGCGTGTCCT--- 5664 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 || |||||| |||||| |||||| | | |||| | ||||||| ||||| | | ||| Sbjct 5663 CCCTGGCCGAAAGGTCCGGGTAACCCGCTGAAACACCTTCGTGCTTGGGATTGGGGCTTG 5604 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||| || | | | |||||||||| || ||||| ||||||||| ||||||| |||||| Sbjct 5603 AAATTGTTCCCCATGAACGAGGAATTCCCAGTAAAGGCGTGTCATTAGCACGCCTTGATT 5544 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 5543 ACGTCCCTGCCCTTTGTA 5526 >seq4256 Length=20900 Score = 187 bits (206), Expect = 5e-45 Identities = 199/261 (76%), Gaps = 4/261 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAG-GCAATAACAGGTCTGTG 130 |||||||||||||| | |||| | || | | | | || ||||||||||||||||| Sbjct 20396 CTTCTTAGAGGGACAAGCGGCGCTCGCAGCCGCACGAAACAGAGCAATAACAGGTCTGTG 20337 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCA--- 187 |||||||||||||| | |||||||||||| |||||||||| | || || | | Sbjct 20336 ATGCCCTTAGATGTCCGGGGCCGCACGCGTGCTACACTGAAGTGGTCATCGTGCATACTG 20277 Query 188 TCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCA 247 | ||| ||| |||| ||||||| | | || | | ||||| ||||||| | ||| Sbjct 20276 TTTCCTGCTCCGAAAGGAGTGGGTAACCGCTTGAACCCATTTCGTGATGGGGATTGGGCA 20217 Query 248 TTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTG 307 ||| ||||||||| | | |||||||||| || |||||||| | ||||| ||| |||||| Sbjct 20216 TTGTAATTATTGCCCATGAACGAGGAATTCCCAGTAAGCGTGAGTCATTAGCTTGCGTTG 20157 Query 308 ATTACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||||| Sbjct 20156 ATTACGTCCCTGCCCTTTGTA 20136 >seq5 Length=41956025 Score = 138 bits (152), Expect = 2e-30 Identities = 90/99 (91%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 230 CGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCG 289 |||| |||||||||| |||||||||| ||| |||| |||||||||| ||||||||||||| Sbjct 17352362 CGTGATGGGGATAGATCATTGCAATTGTTGGTCTTAAACGAGGAATTCCTAGTAAGCGCG 17352303 Query 290 TGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||||||| |||||||| ||||||||||||||||||| Sbjct 17352302 AGTCATCAGCTCGCGTTGACTACGTCCCTGCCCTTTGTA 17352264 >seq4344 Length=2483 Score = 96.9 bits (106), Expect = 7e-18 Identities = 59/63 (94%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 266 AACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTT 325 |||||||||| ||||||||||||| ||||||||| |||||||| |||||||||||||||| Sbjct 2481 AACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGAATACGTCCCTGCCCTTT 2422 Query 326 GTA 328 ||| Sbjct 2421 GTA 2419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947154288128