Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20
2016-05-24] 4,826 sequences; 421,502,825 total letters
Query= AAMG01002194.1
Length=319
Score E
Sequences producing significant alignments: (Bits) Value
seq4825 129 1e-27
seq1 114 2e-23
seq11 105 1e-20
seq3 102 1e-19
seq4826 80.6 5e-13
seq1670 80.6 5e-13
seq7 80.6 5e-13
>seq4825
Length=155848
Score = 129 bits (142), Expect = 1e-27
Identities = 177/243 (73%), Gaps = 11/243 (5%)
Strand=Plus/Plus
Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69
||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| ||||
Sbjct 104909 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGG 104968
Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129
|||| | ||| | | | |||||| ||||| |||||| || |||| |||
Sbjct 104969 GAGTT-GAAAATAAGCATAGATCCGGAGATTCCCGAATAGGTCAACC------TTTCAAA 105021
Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188
| ||| |||||||| ||| || | |||| || ||| ||||||||||||||||| |||
Sbjct 105022 C--TGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 105078
Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248
||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| ||
Sbjct 105079 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 105138
Query 249 CCT 251
|||
Sbjct 105139 CCT 105141
Score = 129 bits (142), Expect = 1e-27
Identities = 177/243 (73%), Gaps = 11/243 (5%)
Strand=Plus/Minus
Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69
||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| ||||
Sbjct 135132 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGG 135073
Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129
|||| | ||| | | | |||||| ||||| |||||| || |||| |||
Sbjct 135072 GAGTT-GAAAATAAGCATAGATCCGGAGATTCCCGAATAGGTCAACC------TTTCAAA 135020
Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188
| ||| |||||||| ||| || | |||| || ||| ||||||||||||||||| |||
Sbjct 135019 C--TGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 134963
Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248
||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| ||
Sbjct 134962 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 134903
Query 249 CCT 251
|||
Sbjct 134902 CCT 134900
>seq1
Length=51465339
Score = 114 bits (126), Expect = 2e-23
Identities = 174/243 (72%), Gaps = 11/243 (5%)
Strand=Plus/Minus
Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69
||||||| ||| ||| | || || || || ||||||| ||| | ||| ||||
Sbjct 16932829 GGTGGATACCTAGGCACCCAGAGATGAGGAGGGGCGTAGTAAGCGACGAAATGCTTCGGG 16932770
Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129
|||| | ||| | | | ||||| ||||| |||||| || |||| |||
Sbjct 16932769 GAGTT-GAAAATAAGCGTAGATCCAGAGATTCCCGAATAGGTCAACC------TTTCAAA 16932717
Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188
| ||| |||||||| ||| || | |||| || ||| ||||||||||||||||| |||
Sbjct 16932716 C--TGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 16932660
Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248
||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| ||
Sbjct 16932659 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 16932600
Query 249 CCT 251
|||
Sbjct 16932599 CCT 16932597
>seq11
Length=1570004
Score = 105 bits (116), Expect = 1e-20
Identities = 172/243 (71%), Gaps = 11/243 (5%)
Strand=Plus/Plus
Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69
||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| ||||
Sbjct 154155 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGG 154214
Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129
|||| | ||| | | | ||||| ||||| |||||| || |||| |||
Sbjct 154215 GAGTT-GAAAATAAGCATAGATCCAGAGATTCCCGAATAGGTCAACC------TTTCAAA 154267
Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188
| ||| || ||||| ||| || | | || || ||| ||||||||||||||||| |||
Sbjct 154268 C--TGC-TGTTGAATCCATGGGCAGGAAAGAGACAACCTGGCGAACTGAAACATCTTAGT 154324
Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248
||| | ||||||||| ||| | ||||||| ||||| |||||||||||| ||| ||
Sbjct 154325 AGCCAGAAGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATAGGAGCAG 154384
Query 249 CCT 251
|||
Sbjct 154385 CCT 154387
>seq3
Length=50312079
Score = 102 bits (112), Expect = 1e-19
Identities = 93/116 (80%), Gaps = 1/116 (1%)
Strand=Plus/Minus
Query 137 TGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCA 195
|||||||| ||| || | |||| || ||| ||||||||||||||||| |||||| |
Sbjct 20986366 TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGTAGCCAAA 20986307
Query 196 GGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251
|||||||||| ||| | |||||| ||||| |||||||||||||||| |||||
Sbjct 20986306 GGAAAAGAAAGCAAAAGCGATTCCAGTAGTAGCGGCGAGCGAAATGGGAGCAGCCT 20986251
Score = 73.4 bits (80), Expect = 7e-11
Identities = 61/75 (81%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 171 GAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGG 230
|||||| ||||||||||||||| | |||| |||||||||||||| || | ||| ||
Sbjct 19984350 GAACTGGAACATCTAAGTAGCTAAACGAAAGGAAATCAACCGAGACTCTGTTACTAGCGG 19984291
Query 231 CGAGCGAAATGGGAT 245
||||||||| ||||
Sbjct 19984290 CGAGCGAAAGCGGAT 19984276
>seq4826
Length=244980
Score = 80.6 bits (88), Expect = 5e-13
Identities = 64/77 (83%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228
|||||||||||||||| ||||||| ||||| |||||||||||||| ||| |||||
Sbjct 90361 GCGAACTGAAACATCTGAGTAGCTAAAGGAAGGGAAATCAACCGAGACTCCGTTAGTAGC 90302
Query 229 GGCGAGCGAAATGGGAT 245
||||||||| | ||||
Sbjct 90301 GGCGAGCGAGAGCGGAT 90285
>seq1670
Length=24701
Score = 80.6 bits (88), Expect = 5e-13
Identities = 64/77 (83%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228
|||||||||||||||| ||||||| ||||| |||||||||||||| ||| |||||
Sbjct 20741 GCGAACTGAAACATCTGAGTAGCTAAAGGAAGGGAAATCAACCGAGACTCCGTTAGTAGC 20800
Query 229 GGCGAGCGAAATGGGAT 245
||||||||| | ||||
Sbjct 20801 GGCGAGCGAGAGCGGAT 20817
>seq7
Length=36358036
Score = 80.6 bits (88), Expect = 5e-13
Identities = 64/77 (83%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228
|||||||||||||||| ||||||| ||||| |||||||||||||| ||| |||||
Sbjct 11505865 GCGAACTGAAACATCTGAGTAGCTAAAGGAAGGGAAATCAACCGAGACTCCGTTAGTAGC 11505924
Query 229 GGCGAGCGAAATGGGAT 245
||||||||| | ||||
Sbjct 11505925 GGCGAGCGAGAGCGGAT 11505941
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 918355678016
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |