Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq4825 123 5e-26 seq2194 123 5e-26 seq5 123 5e-26 seq1 123 5e-26 seq4826 116 8e-24 seq21 89.7 1e-15 seq9 84.2 5e-14 >seq4825 Length=155848 Score = 123 bits (136), Expect = 5e-26 Identities = 194/279 (70%), Gaps = 18/279 (6%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| || ||| || | Sbjct 101472 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATACCGTCAT-----------T 101424 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | || ||| | |||||||||| || | |||| | ||||| ||| ||||| Sbjct 101423 GC------TTCTTCTCCGGGAAAAGAAGTTCACGACCCGTGGG-CCTTCTACCTCCACGC 101371 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || ||||| |||||||||||||||||| Sbjct 101370 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 101311 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | ||||||| || | ||| || Sbjct 101310 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 101251 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | | | || ||| || || || | || |||| ||||| Sbjct 101250 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 101212 Score = 123 bits (136), Expect = 5e-26 Identities = 194/279 (70%), Gaps = 18/279 (6%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| || ||| || | Sbjct 138569 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATACCGTCAT-----------T 138617 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | || ||| | |||||||||| || | |||| | ||||| ||| ||||| Sbjct 138618 GC------TTCTTCTCCGGGAAAAGAAGTTCACGACCCGTGGG-CCTTCTACCTCCACGC 138670 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || ||||| |||||||||||||||||| Sbjct 138671 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 138730 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | ||||||| || | ||| || Sbjct 138731 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 138790 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | | | || ||| || || || | || |||| ||||| Sbjct 138791 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 138829 >seq2194 Length=21910 Score = 123 bits (136), Expect = 5e-26 Identities = 194/279 (70%), Gaps = 18/279 (6%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| || ||| || | Sbjct 17755 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATACCGTCAT-----------T 17707 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | || ||| | |||||||||| || | |||| | ||||| ||| ||||| Sbjct 17706 GC------TTCTTCTCCGGGAAAAGAAGTTCACGACCCGTGGG-CCTTCTACCTCCACGC 17654 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || ||||| |||||||||||||||||| Sbjct 17653 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 17594 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | ||||||| || | ||| || Sbjct 17593 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 17534 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | | | || ||| || || || | || |||| ||||| Sbjct 17533 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 17495 >seq5 Length=41956025 Score = 123 bits (136), Expect = 5e-26 Identities = 194/279 (70%), Gaps = 18/279 (6%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| || ||| || | Sbjct 32787772 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATACCGTCAT-----------T 32787820 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | || ||| | |||||||||| || | |||| | ||||| ||| ||||| Sbjct 32787821 GC------TTCTTCTCCGGGAAAAGAAGTTCACGACCCGTGGG-CCTTCTACCTCCACGC 32787873 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || ||||| |||||||||||||||||| Sbjct 32787874 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 32787933 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | ||||||| || | ||| || Sbjct 32787934 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 32787993 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | | | || ||| || || || | || |||| ||||| Sbjct 32787994 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 32788032 Score = 91.5 bits (100), Expect = 3e-16 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 135 AGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTG 194 || || ||| |||||| |||||||| |||||||||||||||||||||| | | || || Sbjct 13617427 AGGCTTTCGCCCATTGCGGAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTTGGCCATG 13617486 Query 195 TCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGT 252 ||||||| ||| ||||| || | ||||||| || | |||| ||| | | || ||| Sbjct 13617487 TCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTATTGATCATCGCCTTGGT 13617544 >seq1 Length=51465339 Score = 123 bits (136), Expect = 5e-26 Identities = 194/279 (70%), Gaps = 18/279 (6%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| || ||| || | Sbjct 12124038 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATACCGTCAT-----------T 12124086 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | || ||| | |||||||||| || | |||| | ||||| ||| ||||| Sbjct 12124087 GC------TTCTTCTCCGGGAAAAGAAGTTCACGACCCGTGGG-CCTTCTACCTCCACGC 12124139 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || ||||| |||||||||||||||||| Sbjct 12124140 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 12124199 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | ||||||| || | ||| || Sbjct 12124200 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 12124259 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | | | || ||| || || || | || |||| ||||| Sbjct 12124260 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 12124298 Score = 123 bits (136), Expect = 5e-26 Identities = 194/279 (70%), Gaps = 18/279 (6%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| || ||| || | Sbjct 16944965 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATACCGTCAT-----------T 16944917 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | || ||| | |||||||||| || | |||| | ||||| ||| ||||| Sbjct 16944916 GC------TTCTTCTCCGGGAAAAGAAGTTCACGACCCGTGGG-CCTTCTACCTCCACGC 16944864 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || ||||| |||||||||||||||||| Sbjct 16944863 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 16944804 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | ||||||| || | ||| || Sbjct 16944803 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 16944744 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | | | || ||| || || || | || |||| ||||| Sbjct 16944743 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 16944705 Score = 82.4 bits (90), Expect = 2e-13 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 154 AATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGG 213 || ||||| ||||||||||||| |||||||||||| |||||||||||| ||| ||||| Sbjct 14945122 AAAATTCCCCACTGCTGCCTCCTGTAGGAGTTTGGGCCGTGTCTCAGTCCCAGTGTGGCT 14945063 Query 214 GACCTTCCTCTCAGA 228 || | |||||| || Sbjct 14945062 GATCACCCTCTCGGA 14945048 >seq4826 Length=244980 Score = 116 bits (128), Expect = 8e-24 Identities = 145/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 105 CCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCA 164 ||||| || |||||| | | ||||| || | || ||| |||||| |||| ||||| || Sbjct 125871 CCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCA 125930 Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCT 224 |||||||| ||||| ||||| || |||||||||||| ||| ||||| || | ||| Sbjct 125931 CTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCGTCCGAA 125990 Query 225 CAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAAC 284 ||| | ||| |||| | |||| ||| ||| ||||| || |||||||||| || Sbjct 125991 AAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGACCAACTACCTAATACTAC 126050 Query 285 GCATCCCCATCGTACACCG 303 ||| | |||| ||| || Sbjct 126051 GCAGGCTCATCAAACAGCG 126069 >seq21 Length=514035 Score = 89.7 bits (98), Expect = 1e-15 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 133 TCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCG 192 |||| || ||| |||||| || ||||| |||||||||||||||||||||| ||| ||| Sbjct 480326 TCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 480267 Query 193 TGTCTCAGTTCCAATGTGG 211 ||||||||| ||| ||||| Sbjct 480266 TGTCTCAGTCCCAGTGTGG 480248 >seq9 Length=33682890 Score = 84.2 bits (92), Expect = 5e-14 Identities = 110/150 (73%), Gaps = 3/150 (2%) Strand=Plus/Plus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||| | || | |||| | ||||| ||| ||||| | | ||| |||| || Sbjct 3431019 AAAAGAAGGTGACGACCCGTGGG-CCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTT 3431077 Query 141 TCGTCCATTGACCAATAT--TCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTC 198 ||| |||||| || || ||| | ||| |||||||| ||||||| ||| ||||||||| Sbjct 3431078 TCGCCCATTGCGGAAAATCCTCCCCCCTGTTGCCTCCCTTAGGAGTCTGGGCCGTGTCTC 3431137 Query 199 AGTTCCAATGTGGGGGACCTTCCTCTCAGA 228 ||| ||| ||||| || | || |||| || Sbjct 3431138 AGTCCCAGTGTGGCTGATCATCTTCTCGGA 3431167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068748419712