Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq4534 297 3e-78 seq788 286 6e-75 seq3335 111 3e-22 seq2698 102 1e-19 seq4503 77.0 5e-12 >seq4534 Length=645 Score = 297 bits (328), Expect = 3e-78 Identities = 238/281 (85%), Gaps = 7/281 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| || |||||| ||||||||||| ||||||||||||||||||||| Sbjct 72 GTACGAGAGGAACCGCTGA-TTCAGA-TAATTGGTTTTGGCGGCTGTCTGACCAGGCAGT 129 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 130 GCCGCGAAGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 189 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGG---CTTCGGCCCCG 177 ||| | || || | |||| ||||||||||||||||||||||||| || ||||| | Sbjct 190 GAAAGCGGCGAGTACCTCCCACACATCGTAGTCGGATACGAATAGGCCCCTAGGGCCCTG 249 Query 178 AACCTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATT 237 || ||||||||| ||||| || || | |||| | ||| ||| ||||| || || Sbjct 250 AATCTTAGCAGGTTGGCAATGGTGCTCGGGGGGAAATCCCGGGTGCT-AGCTGACGTCTT 308 Query 238 GCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 ||||||| |||||||| |||||||| |||||||| ||||| Sbjct 309 GCAATTT-ACCATGCGTGGGGATAAAACCTTTGCATACGAC 348 >seq788 Length=963 Score = 286 bits (316), Expect = 6e-75 Identities = 234/279 (84%), Gaps = 8/279 (3%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| | Sbjct 894 GTACGAGAGGAACCGCGGT-TTCAGA-TAATTGGTTTTTGCGGCTGTCTGACCAGGCATT 837 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 836 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 777 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGG-CTTCGGCCCCGAA 179 ||||||||||||| | ||||||| ||||||||||||||||| ||| ||||| ||| Sbjct 776 GAACGGGGTGATTTCCGCCTGCAC----CAGTCGGATACGAATAGGCCTTTGGCCCAGAA 721 Query 180 CCTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGC 239 ||||| ||| |||| || | | | ||| ||| | || ||| || | ||||| Sbjct 720 CCTTACCAGATCGGCGTTGGTGGCCTCATTGAAATTGGGGTCACT-AGCCGGTGTATTGC 662 Query 240 AATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 |||| || |||||||| | ||||||||||||||||| Sbjct 661 AATTGTACAGTGCGCAGGATTGAATCCTTTGCAGACGAC 623 >seq3335 Length=3421 Score = 111 bits (122), Expect = 3e-22 Identities = 97/118 (82%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | || |||| |||||||| | ||| | |||| || ||| Sbjct 2008 GTACGAGAGGAACCGTTGGAT-CAGA-TAATTGGTAAATACGGTTAGCTGAAAAGCTAGT 2065 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGC 118 |||| |||||||||||||| |||||||| |||||||||||||||||||||||| ||| Sbjct 2066 GCCGTGAAGCTACCATCTGTAGGATTATGACTGAACGCCTCTAAGTCAGAATCCTTGC 2123 Score = 102 bits (112), Expect = 1e-19 Identities = 98/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | | ||||| | ||| || ||| || |||| Sbjct 1722 GTACGAGAGGAACCGTTGA-TTC-GCACAGTTGGTCATCGCGCTTGGTTGAAAAGCCAGT 1779 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| |||||||||||||||||||||||| || | Sbjct 1780 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 1839 Query 121 GAA 123 ||| Sbjct 1840 GAA 1842 >seq2698 Length=84112 Score = 102 bits (112), Expect = 1e-19 Identities = 98/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | | ||||| | ||| || ||| || |||| Sbjct 60912 GTACGAGAGGAACCGTTGA-TTC-GCACAGTTGGTCATCGCGCTTGGTTGAAAAGCCAGT 60855 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| |||||||||||||||||||||||| || | Sbjct 60854 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 60795 Query 121 GAA 123 ||| Sbjct 60794 GAA 60792 Score = 102 bits (112), Expect = 1e-19 Identities = 98/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | | ||||| | ||| || ||| || |||| Sbjct 67235 GTACGAGAGGAACCGTTGA-TTC-GCACAGTTGGTCATCGCGCTTGGTTGAAAAGCCAGT 67178 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| |||||||||||||||||||||||| || | Sbjct 67177 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 67118 Query 121 GAA 123 ||| Sbjct 67117 GAA 67115 Score = 102 bits (112), Expect = 1e-19 Identities = 98/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | | ||||| | ||| || ||| || |||| Sbjct 80393 GTACGAGAGGAACCGTTGA-TTC-GCACAGTTGGTCATCGCGCTTGGTTGAAAAGCCAGT 80336 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| |||||||||||||||||||||||| || | Sbjct 80335 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 80276 Query 121 GAA 123 ||| Sbjct 80275 GAA 80273 Score = 98.7 bits (108), Expect = 2e-18 Identities = 97/123 (79%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | | ||||| | ||| || ||| || |||| Sbjct 47162 GTACGAGAGGAACCGTTGA-TTC-GCACAGTTGGTCATCGCGCTTGGTTGAAAAGCCAGT 47105 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | | ||||||||| |||||||||||||||||||||||| || | Sbjct 47104 GGCGCGAAGCTACCGTGCGATGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 47045 Query 121 GAA 123 ||| Sbjct 47044 GAA 47042 >seq4503 Length=10536 Score = 77.0 bits (84), Expect = 5e-12 Identities = 87/114 (76%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | ||| || ||| ||| || | ||| |||| ||| | Sbjct 10465 GTACGAGAGGAACCGCAGG-TTCGGACAAAT-GGTACATGTGCCTGCTCGACCGAGCAAT 10408 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | | ||| |||| | || | |||||||| |||||||||||||||||||||||| Sbjct 10407 GGCACGACGCTATCGTCCGAGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 10354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819161700864