Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20
2016-05-24] 4,826 sequences; 421,502,825 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq4534 297 3e-78
seq788 286 6e-75
seq3335 111 3e-22
seq2698 102 1e-19
seq4503 77.0 5e-12
>seq4534
Length=645
Score = 297 bits (328), Expect = 3e-78
Identities = 238/281 (85%), Gaps = 7/281 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| || |||||| ||||||||||| |||||||||||||||||||||
Sbjct 72 GTACGAGAGGAACCGCTGA-TTCAGA-TAATTGGTTTTGGCGGCTGTCTGACCAGGCAGT 129
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 130 GCCGCGAAGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 189
Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGG---CTTCGGCCCCG 177
||| | || || | |||| ||||||||||||||||||||||||| || ||||| |
Sbjct 190 GAAAGCGGCGAGTACCTCCCACACATCGTAGTCGGATACGAATAGGCCCCTAGGGCCCTG 249
Query 178 AACCTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATT 237
|| ||||||||| ||||| || || | |||| | ||| ||| ||||| || ||
Sbjct 250 AATCTTAGCAGGTTGGCAATGGTGCTCGGGGGGAAATCCCGGGTGCT-AGCTGACGTCTT 308
Query 238 GCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278
||||||| |||||||| |||||||| |||||||| |||||
Sbjct 309 GCAATTT-ACCATGCGTGGGGATAAAACCTTTGCATACGAC 348
>seq788
Length=963
Score = 286 bits (316), Expect = 6e-75
Identities = 234/279 (84%), Gaps = 8/279 (3%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
Sbjct 894 GTACGAGAGGAACCGCGGT-TTCAGA-TAATTGGTTTTTGCGGCTGTCTGACCAGGCATT 837
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 777
Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGG-CTTCGGCCCCGAA 179
||||||||||||| | ||||||| ||||||||||||||||| ||| ||||| |||
Sbjct 776 GAACGGGGTGATTTCCGCCTGCAC----CAGTCGGATACGAATAGGCCTTTGGCCCAGAA 721
Query 180 CCTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGC 239
||||| ||| |||| || | | | ||| ||| | || ||| || | |||||
Sbjct 720 CCTTACCAGATCGGCGTTGGTGGCCTCATTGAAATTGGGGTCACT-AGCCGGTGTATTGC 662
Query 240 AATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278
|||| || |||||||| | |||||||||||||||||
Sbjct 661 AATTGTACAGTGCGCAGGATTGAATCCTTTGCAGACGAC 623
>seq3335
Length=3421
Score = 111 bits (122), Expect = 3e-22
Identities = 97/118 (82%), Gaps = 2/118 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| | || |||| |||||||| | ||| | |||| || |||
Sbjct 2008 GTACGAGAGGAACCGTTGGAT-CAGA-TAATTGGTAAATACGGTTAGCTGAAAAGCTAGT 2065
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGC 118
|||| |||||||||||||| |||||||| |||||||||||||||||||||||| |||
Sbjct 2066 GCCGTGAAGCTACCATCTGTAGGATTATGACTGAACGCCTCTAAGTCAGAATCCTTGC 2123
Score = 102 bits (112), Expect = 1e-19
Identities = 98/123 (80%), Gaps = 2/123 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || ||| | | | ||||| | ||| || ||| || ||||
Sbjct 1722 GTACGAGAGGAACCGTTGA-TTC-GCACAGTTGGTCATCGCGCTTGGTTGAAAAGCCAGT 1779
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||| | ||||||||||| |||||||||||||||||||||||| || |
Sbjct 1780 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 1839
Query 121 GAA 123
|||
Sbjct 1840 GAA 1842
>seq2698
Length=84112
Score = 102 bits (112), Expect = 1e-19
Identities = 98/123 (80%), Gaps = 2/123 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || ||| | | | ||||| | ||| || ||| || ||||
Sbjct 60912 GTACGAGAGGAACCGTTGA-TTC-GCACAGTTGGTCATCGCGCTTGGTTGAAAAGCCAGT 60855
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||| | ||||||||||| |||||||||||||||||||||||| || |
Sbjct 60854 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 60795
Query 121 GAA 123
|||
Sbjct 60794 GAA 60792
Score = 102 bits (112), Expect = 1e-19
Identities = 98/123 (80%), Gaps = 2/123 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || ||| | | | ||||| | ||| || ||| || ||||
Sbjct 67235 GTACGAGAGGAACCGTTGA-TTC-GCACAGTTGGTCATCGCGCTTGGTTGAAAAGCCAGT 67178
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||| | ||||||||||| |||||||||||||||||||||||| || |
Sbjct 67177 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 67118
Query 121 GAA 123
|||
Sbjct 67117 GAA 67115
Score = 102 bits (112), Expect = 1e-19
Identities = 98/123 (80%), Gaps = 2/123 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || ||| | | | ||||| | ||| || ||| || ||||
Sbjct 80393 GTACGAGAGGAACCGTTGA-TTC-GCACAGTTGGTCATCGCGCTTGGTTGAAAAGCCAGT 80336
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||| | ||||||||||| |||||||||||||||||||||||| || |
Sbjct 80335 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 80276
Query 121 GAA 123
|||
Sbjct 80275 GAA 80273
Score = 98.7 bits (108), Expect = 2e-18
Identities = 97/123 (79%), Gaps = 2/123 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || ||| | | | ||||| | ||| || ||| || ||||
Sbjct 47162 GTACGAGAGGAACCGTTGA-TTC-GCACAGTTGGTCATCGCGCTTGGTTGAAAAGCCAGT 47105
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||| | | ||||||||| |||||||||||||||||||||||| || |
Sbjct 47104 GGCGCGAAGCTACCGTGCGATGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 47045
Query 121 GAA 123
|||
Sbjct 47044 GAA 47042
>seq4503
Length=10536
Score = 77.0 bits (84), Expect = 5e-12
Identities = 87/114 (76%), Gaps = 2/114 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| | ||| || ||| ||| || | ||| |||| ||| |
Sbjct 10465 GTACGAGAGGAACCGCAGG-TTCGGACAAAT-GGTACATGTGCCTGCTCGACCGAGCAAT 10408
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
| | ||| |||| | || | |||||||| ||||||||||||||||||||||||
Sbjct 10407 GGCACGACGCTATCGTCCGAGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 10354
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 819161700864
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |