Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daucus_20carota_20subsp._20sativus_20[genbank_20GCA_5F001625215.1_20 2016-05-24] 4,826 sequences; 421,502,825 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq3 190 2e-43 seq1 165 6e-36 >seq3 Length=50312079 Score = 190 bits (210), Expect = 2e-43 Identities = 560/844 (66%), Gaps = 22/844 (3%) Strand=Plus/Plus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 |||||||| || || || || || |||||||| | ||||| |||||||| || |||| Sbjct 34658519 ATGTACAAGAAAGCCGAGGCCTCTTTCTGGACCGCCGAGGAAGTCGATTTATCTCAAGAT 34658578 Query 61156 ATGAATGACTGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCG 61215 | | ||||||| ||| | | ||| | || || |||| ||||| | || Sbjct 34658579 AATGTTCACTGGGAAGCTTTGACTTCTGATGAGAAGCACTTTATTACCCATGTTCTCGCT 34658638 Query 61216 TTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATT-GGAACGTTTCGCGCAGGA 61274 || || |||||||| || || || || |||||||| || | |||| | |||| Sbjct 34658639 TTTTTCGCCGCTTCTGATGGCATTGTGCTCGAGAATTTGGCCGGGAGGTTTAT-GAAGGA 34658697 Query 61275 GGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCA 61334 |||||| ||| |||||||| | ||| || || || |||||||| || |||||| | || Sbjct 34658698 GGTGCAGGTGGCGGAGGCGAGGGCTTTTTATGGGTTTCAGATTGCGATAGAGAATATTCA 34658757 Query 61335 CTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA-GCGG-GCGGAACGTGAA 61392 ||||||||||| ||| | | | || | || || | ||| ||| | ||| | || Sbjct 34658758 TTCGGAGATGTATAGTTTGTTGTTGGAGAGTTATATTAAGGATTCGGAGGAGAAGGCGA- 34658816 Query 61393 CGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTC 61452 | ||||||| || || |||||||| ||| || || ||| || | ||||| | Sbjct 34658817 -GGTTGTTCAGGGCGATTGAGACGATTCCGTGTGTCGAGAAGAAGGCCAAGTGGGCGATG 34658875 Query 61453 AATTGGATCACCAGTACAACGGCTACATTTGGTGA-ACGATTGCTGGCATTTGCGGTGGT 61511 | ||||| | | || | |||| || | |||| | || ||||| || Sbjct 34658876 AGGTGGAT---TGATGGAGGGGAGTCGTTTGCGGAGAGGATT-ATTGCGTTTGCTTGTGT 34658931 Query 61512 CGAGGGTGTATTTTTC-AGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGAC 61570 || || | |||||| | ||| | | || ||| || |||||| ||||||| | || | Sbjct 34658932 GGAAGGGATTTTTTTCTCGGGGAGCTTCTG-CGCGATTTTTTGGCTGAAGAAGAGGGGGC 34658990 Query 61571 TTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTG 61630 |||||||||| |||| ||| |||||| |||| || | || ||||| ||||||||| Sbjct 34658991 TTATGCCCGGATTGACTTTCTCGAATGAGCTGATTTCGAGGGATGAGGGTCTGCATTGTG 34659050 Query 61631 ATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAAT-CGTCCGTCGGAGGAGCGTGTG 61689 ||||||| | || | | | | | | | | | || ||| |||||||| || Sbjct 34659051 ATTTTGCATGTATGTTGT----ATGATTTGTTGAGGATGAAGCCGAGTGAGGAGCGGGTT 34659106 Query 61690 GGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCC 61749 | |||||| || ||||| || || ||| ||| | ||| |||||| || Sbjct 34659107 AAGGGGATTGTAGCGGATGCGGTTGAGATTGAGAGGGAGTTTGTTTGTGATGCTTTG-CC 34659165 Query 61750 GTCT-CACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGA 61808 || | | | | || |||||| | | | ||| ||||||||| | ||||| || || Sbjct 34659166 GTGTGCTTTGGTTGGGATGAATGGGGATTTGATGAGTCAGTATATTAAGTTTGTGGCGGA 34659225 Query 61809 CCGTCTGTTGGTCG-ATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATT 61867 | |||||| | || ||||||| | ||| |||||| | | || |||||||||| Sbjct 34659226 TAGGTTGTTGGGAGCGTTGGGGTATG-GGAAGATGTATAATGTGCAGAATCCATTTGATT 34659284 Query 61868 TCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACT 61927 ||||| |||||||| || | || ||||| ||||| || ||||| || || || || | Sbjct 34659285 GGATGGAGTTGATTTCGTTGCAGGGGAAGACTAATTTCTTTGAGAAGCGAGTTGGGGAGT 34659344 Query 61928 ATCA 61931 |||| Sbjct 34659345 ATCA 34659348 >seq1 Length=51465339 Score = 165 bits (182), Expect = 6e-36 Identities = 555/846 (66%), Gaps = 26/846 (3%) Strand=Plus/Minus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 |||||||| || || || |||||||||||||| | || || |||||||| || ||||| Sbjct 39366235 ATGTACAAGAAAGCCGAGGCTTCCTTCTGGACCGCCGAAGAAGTCGATTTATCGCAAGAC 39366176 Query 61156 ATGAATGACTGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCG 61215 | | | | | || | | || |||| ||| | | || ||| | || Sbjct 39366175 ACTGCTCATTTCCAAACCCTAACTCCCAACGAGAAACACTTCGTCACTCACGTGCTCGCT 39366116 Query 61216 TTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAG 61275 ||||| |||||||| ||||| ||||| |||||| | | | ||| | ||||| Sbjct 39366115 TTCTTCGCCGCTTCTGACGGCATCGTGCTCGAGAATCTCGCCGGCAGGTTCATGAAGGAG 39366056 Query 61276 GTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCAC 61335 || || ||| ||||||| | ||||||||||||||||| || || |||||| | || Sbjct 39366055 GTCCAGGTGGCGGAGGCTAGGGCGTTCTACGGCTTCCAGATCGCGATCGAGAATATACAT 39365996 Query 61336 TCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA-GCGGGCGGAACGTGAACG 61394 ||||||||||| ||| | || | || ||||| | | ||| || | | | | | | | Sbjct 39365995 TCGGAGATGTATAGTTTGCTTCTTGAGACGTATGTGAAGGATTCGTGTGAGAAGAGTA-G 39365937 Query 61395 ATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAA 61454 ||||| | || || |||||||| ||| || || |||| ||| ||||||| | | Sbjct 39365936 GTTGTTTAGGGCGATTGAGACGATTCCGTGTGTCGAGAGGAAGGCGAATTGGGCGCTGAG 39365877 Query 61455 TTGGATCACCAGTACAACGGCTACATTTGGTGA-ACGATTGCTGGCATTTGCGGTGGTCG 61513 ||||| | | || || | || | ||||| |||| ||||| || | Sbjct 39365876 GTGGAT---TGATGGAGGGGAGTGTTTCGCGGAGAGGATTG-TGGCGTTTGCTTGTGTGG 39365821 Query 61514 AGGGTGTATTTTTC-AGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTT 61572 | || | |||||| | ||| |||| ||| | |||||||||||||| | || || Sbjct 39365820 AAGGGATTTTTTTCTCGGGGAGTTTTTG-CGCGGTGTTTTGGTTGAAGAAGAGAGGGCTG 39365762 Query 61573 ATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGAT 61632 ||||| || |||||| | |||||| |||| || || || ||||| |||||||||| Sbjct 39365761 ATGCCTGGATTGACCTACTCGAATGAGCTGATTTCGCGAGATGAGGGATTGCATTGTGAC 39365702 Query 61633 TTTGCTGTTTTGCTATTCAAACGCTATCT----GGTGAATCGTCCGTCGGAGGAGCGTGT 61688 ||||| |||| | | | | | | | |||||| ||| |||||| | || Sbjct 39365701 TTTGCGTGTTTGTTGT----ATGATTTATTGAGGGTGAA---GCCGAGTGAGGAGAGGGT 39365649 Query 61689 GGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCC 61748 | |||||| || || || || || ||| ||| | ||| || || | Sbjct 39365648 TAAGGGGATTGTGGCGGATGCAGTTGAGATAGAGAGGGAGTTTGTTTGTGATGCGTT-AC 39365590 Query 61749 CGTCT-CACTCATCGGCATGAATTGTGGAC-TAATGTCGCAGTATATTGAATTTGTTGCC 61806 ||| | | | | || ||||| || |||| | ||| ||||||||| ||||| || Sbjct 39365589 CGTGTGCTTTGGTTGGGATGAA-TGGGGACTTGATGAGTCAGTATATTAGGTTTGTGGCG 39365531 Query 61807 GACCGTCTGTTGGTCG-ATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGA 61865 || | ||||||| | || ||||||| | ||| ||| || | | || || ||||| Sbjct 39365530 GATAGGTTGTTGGTTGCGTTGGGGTATG-GGAAGATGTATGATGTGCAGAATCCGTTTGA 39365472 Query 61866 TTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGA 61925 || ||||| |||||||| || | || ||||| ||||| || ||||| | || || || Sbjct 39365471 TTGGATGGAGTTGATTTCGTTGCAGGGGAAGACTAATTTCTTTGAGAAGAGGGTTGGGGA 39365412 Query 61926 CTATCA 61931 ||||| Sbjct 39365411 GTATCA 39365406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397544616292640