Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq16010 389 6e-106 seq13714 379 3e-103 seq12324 379 3e-103 seq10081 280 2e-73 >seq16010 Length=173124 Score = 389 bits (430), Expect = 6e-106 Identities = 242/256 (95%), Gaps = 3/256 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| | Sbjct 56756 GTACAAAGGGCAGGGACGTAGTCAACGCAAGCT-GATGACTCGCGCTTACTAGGAATT-C 56699 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 56698 CTAGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 56639 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||| Sbjct 56638 CCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCACGCGTGCGG 56579 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| Sbjct 56578 CCCAGAACATCTAAAGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTGGAAG 56519 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 56518 GCCATAATCCCTCTAA 56503 >seq13714 Length=42945 Score = 379 bits (420), Expect = 3e-103 Identities = 240/256 (94%), Gaps = 3/256 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| | Sbjct 7287 GTACATAGGGCAGGGACGTAGTCAACGCGAG-TTGATGACTCGCGCTTACTAGGAATT-C 7344 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| Sbjct 7345 CTCGTTGAAGACCAACAATTAAAATGATCTATCCCCATCACGATGAAATTTCAAAAATTA 7404 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||| Sbjct 7405 CCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCACGCGTGCGG 7464 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| Sbjct 7465 CCCAGAACATCTAAAGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTGGAAG 7524 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 7525 GCCATAATCCCTCTAA 7540 Score = 170 bits (188), Expect = 3e-40 Identities = 104/109 (95%), Gaps = 1/109 (1%) Strand=Plus/Plus Query 148 CTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGAC 207 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 12067 CTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGAC 12126 Query 208 CTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCAT-CTCCCTCGAA 255 |||||||||||||||||||||||||||| |||||||| |||||| || Sbjct 12127 CTGTTATTGCCTCAAACTTCCGTGGCCTGGAAGGCCATAGTCCCTCTAA 12175 >seq12324 Length=50681 Score = 379 bits (420), Expect = 3e-103 Identities = 240/256 (94%), Gaps = 3/256 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 11700 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 11757 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11758 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 11817 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 11818 CCCGGGTACGTCGGCCAAGGCTATAGAGTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 11877 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||| Sbjct 11878 CCCAGAACATCTAAGGGCATCACATACCAGTTATTGCCTCAAACTTCCGTGGCCTGGAAG 11937 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 11938 GCCATAGTCCCTCTAA 11953 >seq10081 Length=34917 Score = 280 bits (310), Expect = 2e-73 Identities = 204/231 (88%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||||| |||||||| ||||||||||| ||| | Sbjct 11530 GTACAAAGGGCAGGGACGTAATCAACGCGAGCT-GATGACTCACGCTTACTAGGTATT-C 11587 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| ||| |||||||||| |||||||||| ||||| | ||||| |||||| Sbjct 11588 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACAGAGTTTCACAAGATT 11647 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| ||||| ||||||||| | | ||||| || | ||||||||||||||||||| Sbjct 11648 ACCCAGACCTTCCGGCCAAGGAAAAA-ACTCGCTGGCTCTGTCAGTGTAGCGCGCGTGCG 11706 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGT 230 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11707 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGT 11757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751671533920