Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq10081 158 7e-37 seq16013 131 9e-29 seq16010 118 6e-25 seq13714 114 7e-24 seq12324 114 7e-24 seq16066 100 2e-19 >seq10081 Length=34917 Score = 158 bits (174), Expect = 7e-37 Identities = 105/117 (90%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||||||||||||||||||||||||||| || || | | |||||| Sbjct 12058 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGACACATAAAATTGAGTTCGCCC 12117 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||| Sbjct 12118 GATCCCTAGTCGGCATAGTTTACTGTTAAGACTACAACGGTATCTGATCGTTTTCGA 12174 >seq16013 Length=170587 Score = 131 bits (144), Expect = 9e-29 Identities = 99/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||||| | ||| || ||||||| || Sbjct 94804 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGTGTCCTAAAAGTAACATCCGCC 94745 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 94744 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 94688 >seq16010 Length=173124 Score = 118 bits (130), Expect = 6e-25 Identities = 98/117 (84%), Gaps = 2/117 (2%) Strand=Plus/Minus Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGA-GTCAAAATGATAACATCGCCC 60 |||||||| ||||| ||||||| ||||||||| |||| ||| || ||||||| || Sbjct 56225 AACCCAAAAACTTTAATTTCTCATAAGGTGCC-AGCGGTGTCCTAAAAGTAACATCCGCC 56167 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||| ||||||| Sbjct 56166 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCATCTTCGA 56110 >seq13714 Length=42945 Score = 114 bits (126), Expect = 7e-24 Identities = 96/115 (83%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGA-GTCAAAATGATAACATCGCCC 60 |||||||| ||||| ||||||| ||||||||| |||| ||| || ||||||| || Sbjct 7818 AACCCAAAAACTTTAATTTCTCATAAGGTGCC-AGCGGTGTCCTAAAAGTAACATCCGCC 7876 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTC 115 ||||||| |||||||| ||||| |||| |||||| |||||||||||||| ||||| Sbjct 7877 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCATCTTC 7931 >seq12324 Length=50681 Score = 114 bits (126), Expect = 7e-24 Identities = 94/112 (84%), Gaps = 2/112 (2%) Strand=Plus/Plus Query 7 AAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCA-AAATGATAACATCGCCCGATCC 65 ||| ||||| ||||||| |||||||||| | ||| ||||| ||||||| ||||||| Sbjct 12235 AAAAACTTTAATTTCTCATAAGGTGCCGGCGGTGTCCTAAATG-TAACATCCGCCGATCC 12293 Query 66 CTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || |||||||| ||||| |||| |||||| ||| |||||||||||||||||| Sbjct 12294 CTGGTCGGCATCGTTTATGGTTGAGACTAGGACAGTATCTGATCGTCTTCGA 12345 >seq16066 Length=209679 Score = 100 bits (110), Expect = 2e-19 Identities = 99/123 (80%), Gaps = 9/123 (7%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGT---CAAAATGATAACATCG 57 ||||||||| ||||||||||||| ||||||||| |||| || | ||| | ||||||| Sbjct 50163 GAACCCAAAAACTTTGATTTCTCATAAGGTGCC-AGCG-GTGCCCTAAAAG-TAACATCC 50107 Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTA---TCTGATCGTCTT 114 ||||||||| |||| ||| ||||| | || |||||| ||| ||| ||| |||||||| Sbjct 50106 GCCGATCCCTGGTCGACATCGTTTATGATTGAGACTAGGACAGTATCGTCTAATCGTCTT 50047 Query 115 CGA 117 ||| Sbjct 50046 CGA 50044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278282320320