Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq12934 239 2e-60 seq14481 226 1e-56 seq12324 214 7e-53 seq10081 196 2e-47 seq16010 138 5e-30 seq3685 104 1e-19 >seq12934 Length=42260 Score = 239 bits (264), Expect = 2e-60 Identities = 225/282 (80%), Gaps = 6/282 (2%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463 |||||||||||| ||||||||||||||||||| |||| | ||||||| ||| | | Sbjct 29665 CGGCCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGCGAGTA 29606 Query 464 AACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGT-GAGGGTGCACCATCGA 521 ||||||| || || || ||| | | || ||||| ||| | | ||||||||| ||| Sbjct 29605 AACCCGTACGGCGCAAGGAAGCTAATTGG---TGGGATCCCCTAGCGGGTGCACCGCCGA 29549 Query 522 CCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGAT 581 |||| | |||| | | || || || |||| ||||||| |||| |||||||||||||| Sbjct 29548 CCGACCTTGATCTTCTGAGAAGGGTTCGAGTGTGAGCATACCTGTCGGGACCCGAAAGAT 29489 Query 582 GGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGT 641 |||||||||||||||| ||| ||||||||||||||||||||||||||| || |||| | Sbjct 29488 GGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGAAGCGAT 29429 Query 642 TCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| ||||||||||| ||||| | |||||||||||||||| Sbjct 29428 ACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 29387 Score = 156 bits (172), Expect = 2e-35 Identities = 131/161 (81%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 39 CGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAA 98 ||||||| |||||||| ||||||||| | || ||| |||||||| | || || |||||| Sbjct 30034 CGAGTCGGGTTGTTTGAGAATGCAGCCCCAAGCGGGCGGTAAATTCCGTCCAAGGCTAAA 29975 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 || ||| |||||||||||||| ||||||| | || ||||||||||||| |||||| | Sbjct 29974 TACCGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGAAAAGGACTTTGAA 29915 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| ||| || | ||||||||| | ||||||||| Sbjct 29914 AAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 29874 >seq14481 Length=56650 Score = 226 bits (250), Expect = 1e-56 Identities = 222/282 (79%), Gaps = 6/282 (2%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463 |||||||||||| ||||||||||||||||||| |||| | ||||||| ||| | | Sbjct 10215 CGGCCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGCGAGTA 10274 Query 464 AACCCGTGC-GCGTAATGAAAGTGAACGGAGGTGGGAACCCGT-GAGGGTGCACCATCGA 521 |||| || | ||| || ||| | | || || || ||| | | |||||||| |||| Sbjct 10275 AACCTGTACTGCGCAAGGAAGCTAATTGGCGG---GATCCCCTAGCGGGTGCACTGTCGA 10331 Query 522 CCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGAT 581 |||| | |||| | | || || || ||| ||||||| |||| |||||||||||||| Sbjct 10332 CCGACCTTGATCTTCTGAGAAGGGTTCAAGTGTGAGCATACCTGTCGGGACCCGAAAGAT 10391 Query 582 GGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGT 641 |||||||||||||||| ||| ||||||||||||||||||||||||||| || |||| | Sbjct 10392 GGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGAAGCGAT 10451 Query 642 TCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| ||||||||||| ||||| | |||||||||||||||| Sbjct 10452 ACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 10493 Score = 156 bits (172), Expect = 2e-35 Identities = 131/161 (81%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 39 CGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAA 98 ||||||| |||||||| ||||||||| | || ||| |||||||| | || || |||||| Sbjct 9846 CGAGTCGGGTTGTTTGAGAATGCAGCCCCAAGCGGGCGGTAAATTCCGTCCAAGGCTAAA 9905 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 || ||| |||||||||||||| ||||||| | || ||||||||||||| |||||| | Sbjct 9906 TACGGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGAAAAGGACTTTGTA 9965 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| ||| || | ||||||||| | ||||||||| Sbjct 9966 AAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 10006 Score = 95.1 bits (104), Expect = 5e-17 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 604 TGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTC 663 |||||||||||||||||||||||||||| || |||| | || ||||||||||| | ||| Sbjct 7259 TGAAGCCAGAGGAAACTCTGGTGGAGGCCCGAAGCGATACTAACGTGCAAATCGTTTGTC 7318 Query 664 AAATTTGGGTATAGGGGCGA 683 | |||||||||||||||| Sbjct 7319 TGACTTGGGTATAGGGGCGA 7338 >seq12324 Length=50681 Score = 214 bits (236), Expect = 7e-53 Identities = 217/279 (78%), Gaps = 4/279 (1%) Strand=Plus/Minus Query 407 GCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-AAA 465 |||||||||| ||||| |||||||| |||| |||| | ||||||| ||| | ||| Sbjct 10285 GCCCGTCTTGAAACACAGACCAAGGGGTCTGACATGTGTGCGAGTCGACGGGCGAGTAAA 10226 Query 466 CCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGT-GAGGGTGCACCATCGACCG 524 ||||| || | | | ||| || | ||||| ||| | | ||||||||| |||||| Sbjct 10225 CCCGTACGGGGCAAGGAAGCTAATTG--GTGGGGTCCCCTAGCGGGTGCACCGCCGACCG 10168 Query 525 ATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGT 584 | | |||| | | || || || |||| ||||||| |||| ||||||||||||||||| Sbjct 10167 ACCTTGATCTTCTGAGAAGGGTTCGAGTGTGAGCATACCTGTCGGGACCCGAAAGATGGT 10108 Query 585 GAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCT 644 |||||||||||| ||| ||||||||||||||||||||||||||| || |||| | || Sbjct 10107 GAACTATGCCTGTGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGAAGCGATACT 10048 Query 645 GGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | | ||||||||| ||||| | |||||||||||||||| Sbjct 10047 GACATGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 10009 Score = 150 bits (166), Expect = 7e-34 Identities = 130/161 (81%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 39 CGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAA 98 ||||||| |||||||| ||||||||| | || ||| |||||||| | || || |||||| Sbjct 10656 CGAGTCGGGTTGTTTGAGAATGCAGCCCCAAGCGGGCGGTAAATTCCGTCCAAGGCTAAA 10597 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 || ||| |||||||||||||| ||||||| | || ||||||||||||| | |||| | Sbjct 10596 TACCGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGAAAAGGAATTTGAA 10537 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| ||| || | ||||||||| | ||||||||| Sbjct 10536 AAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 10496 >seq10081 Length=34917 Score = 196 bits (216), Expect = 2e-47 Identities = 113/116 (97%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 568 GGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGG 627 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 10185 GGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGG 10126 Query 628 AGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||| Sbjct 10125 AGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 10070 >seq16010 Length=173124 Score = 138 bits (152), Expect = 5e-30 Identities = 127/161 (79%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 39 CGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAA 98 ||||||| ||| |||| ||||||||| | || ||| ||||||||| || || |||||| Sbjct 57802 CGAGTCGGGTTATTTGAGAATGCAGCCCCAAGCGGGCAGTAAATTTCGTCCAAGGCTAAA 57861 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 || ||| |||||||||||||| ||||||| || |||| |||||||| |||||| | Sbjct 57862 TACCGGCGAGAGACCGATAGCGAACAAGTACCACGAGGGAAACATGAAAAGGACTTTGAA 57921 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||||||| || | | ||||||| ||||||||| Sbjct 57922 AAGAGAGTTAAAGAGTGCTTTAAATTGTCAGGAGGGAAGCG 57962 >seq3685 Length=9137 Score = 104 bits (114), Expect = 1e-19 Identities = 71/80 (89%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 604 TGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTC 663 |||||||||||||||||||||||||||| || |||| | ||| ||||||||||| ||||| Sbjct 5219 TGAAGCCAGAGGAAACTCTGGTGGAGGCCCGAAGCGATACTGACGTGCAAATCGTTCGTC 5160 Query 664 AAATTTGGGTATAGGGGCGA 683 | |||||||||||||||| Sbjct 5159 TGACTTGGGTATAGGGGCGA 5140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079032862400