Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq15179 152 7e-35 seq15859 120 4e-25 seq11887 120 4e-25 seq11649 105 9e-21 seq15239 95.1 2e-17 seq37443 87.8 2e-15 seq14918 77.0 5e-12 >seq15179 Length=81045 Score = 152 bits (168), Expect = 7e-35 Identities = 181/243 (74%), Gaps = 12/243 (5%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||||||||||| ||||| | ||||||||| ||||| ||| ||| | || Sbjct 54044 CCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCAGAGTCC 53986 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 |||||||||| |||||||||||| ||| || | | ||| | | | |||| | Sbjct 53985 TGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAA--TCAAAAGA 53928 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || | ||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 53927 T--------AGGAGAG-CACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCT 53877 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 | || |||| | | | |||| |||||| |||||| || ||||||||||||||| | Sbjct 53876 TCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGG 53817 Query 246 GTA 248 ||| Sbjct 53816 GTA 53814 >seq15859 Length=140313 Score = 120 bits (132), Expect = 4e-25 Identities = 174/243 (72%), Gaps = 12/243 (5%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||||| ||||| |||| | ||||||||| ||||| ||| ||| | | Sbjct 83327 CCTTCCAGCACCGAGCAGGTGTCAAACTCTATACATCGTGTTACCA-CTTAGCAGAGTCA 83385 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||| |||||| |||||||||||| ||| || | | || | | | |||| | Sbjct 83386 TGTCTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGTCGCTTTCCTAA--TCAAAAGA 83443 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | | | | | ||||| ||||||||||||||||||| ||||||||||| ||| | Sbjct 83444 TAG-------GAAAT--CACCCATTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCTT 83494 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 | || |||| | | | ||||||||||| |||||| || ||||||||||||||| | Sbjct 83495 TCGACATGGTTCCCTCAAGCGCCTTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGG 83554 Query 246 GTA 248 ||| Sbjct 83555 GTA 83557 >seq11887 Length=32656 Score = 120 bits (132), Expect = 4e-25 Identities = 174/243 (72%), Gaps = 12/243 (5%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||||| ||||| |||| | ||||||||| ||||| ||| ||| | | Sbjct 16590 CCTTCCAGCACCGAGCAGGTGTCAAACTCTATACATCGTGTTACCA-CTTAGCAGAGTCA 16648 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||| |||||| |||||||||||| ||| || | | || | | | |||| | Sbjct 16649 TGTCTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGTCGCTTTCCTAA--TCAAAAGA 16706 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | | | | | ||||| ||||||||||||||||||| ||||||||||| ||| | Sbjct 16707 TAG-------GAAAT--CACCCATTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCTT 16757 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 | || |||| | | | ||||||||||| |||||| || ||||||||||||||| | Sbjct 16758 TCGACATGGTTCCCTCAAGCGCCTTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGG 16817 Query 246 GTA 248 ||| Sbjct 16818 GTA 16820 >seq11649 Length=40817 Score = 105 bits (116), Expect = 9e-21 Identities = 87/106 (82%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 143 CACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCG 202 ||||| ||||||||||||||||||| ||||||||||| |||||| || |||| | | Sbjct 29564 CACCCATTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCCCTCA 29623 Query 203 AACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | ||| ||||||| |||||| || ||||||||||||||| |||| Sbjct 29624 AGCGCTTTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGGGTA 29669 >seq15239 Length=86026 Score = 95.1 bits (104), Expect = 2e-17 Identities = 129/182 (71%), Gaps = 20/182 (11%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| |||| ||||||||||||| || |||||| | |||| || ||| || |||| Sbjct 42494 CCTTCCGTCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTA-CGACTTTGCGGAGACC 42552 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || || ||||| ||| Sbjct 42553 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTTCGACCCCCA------------- 42599 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || | | |||||| |||||||||| |||||||||| |||||| ||| ||||| Sbjct 42600 TTGT------GAGGGGGCACCTCTTCTCCCGAGGTTACGGGGCTATTTTGTCGAGTTCCT 42653 Query 186 TA 187 || Sbjct 42654 TA 42655 >seq37443 Length=1516 Score = 87.8 bits (96), Expect = 2e-15 Identities = 74/91 (81%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 146 CCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCGAAC 205 ||||||||||||||||||||||| |||||||||| ||||||| | |||| | || | Sbjct 1516 CCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGC 1457 Query 206 GCCTTAGTATTCTCTACCTGACCACCTGTGT 236 ||| ||||||||||||| | |||||||| Sbjct 1456 CCCTAGGTATTCTCTACCTACCTACCTGTGT 1426 >seq14918 Length=69559 Score = 77.0 bits (84), Expect = 5e-12 Identities = 74/95 (78%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 142 GCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCC 201 |||| |||||||| |||||||||||| |||||||| || | |||| || |||| | | Sbjct 42696 GCACACCTTCTCCGGAAGTTACGGGGTCATTTTGCTGAGTCCCTTCGACATGGTTCTCTC 42755 Query 202 GAACGCCTTAGTATTCTCTACCTGACCACCTGTGT 236 | |||| |||||| || ||| || ||||||||| Sbjct 42756 AAGCGCCCTAGTATACTTTACTTGTTCACCTGTGT 42790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694096693024