Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq15179 246 8e-63 seq15859 188 2e-45 seq11887 188 2e-45 seq15243 141 2e-31 seq14741 116 9e-24 seq11649 116 9e-24 seq10365 107 5e-21 seq15239 98.7 3e-18 seq37443 77.0 8e-12 >seq15179 Length=81045 Score = 246 bits (272), Expect = 8e-63 Identities = 302/414 (73%), Gaps = 25/414 (6%) Strand=Plus/Minus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 ||| | |||||||||| | || ||||||||||| | ||| | |||||||||| || Sbjct 54230 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 54171 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 54170 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 54111 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAAC 186 | |||| ||||| |||||||||||| |||||||| || | ||||| |||| Sbjct 54110 CAGTTAGAGTTACTGCCGCCGTTTACTGGGGCTTCCATTCAAAGCTT--------ATAAC 54059 Query 187 CCCATCAATT--AACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGT 244 | | || ||||||| |||||||||||| |||| || |||||| || || | Sbjct 54058 ACTTTTCCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA 53999 Query 245 GTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCA 304 || ||||||| ||||||||||||||||||||||| | |||||||| | | | | Sbjct 53998 CTTAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCC 53939 Query 305 TGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGC 364 | | | | || || |||| ||||||||||||||||||| | Sbjct 53938 TAATCAAA---AGATAGGAGAGCACC------------CCTTCTCCCGAAGTTACGGGGT 53894 Query 365 CTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTAC 418 | ||||||| ||||||||| | ||||||||||||||| | |||| |||||| Sbjct 53893 CATTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTAC 53840 >seq15859 Length=140313 Score = 188 bits (208), Expect = 2e-45 Identities = 289/406 (71%), Gaps = 26/406 (6%) Strand=Plus/Plus Query 17 CTTCACAGCGATTTCAATTTCACTGAGTCTCGGGT-GGAGACAGCGCCGCCATCGTTACG 75 |||||| | || ||||||||||||| || || | ||||||| || || ||||||| Sbjct 83148 CTTCACGGAGAATTCAATTTCACTG-GT-TCATTTCGGAGACAACGAGGCAGTCGTTACA 83205 Query 76 CCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTG 135 |||||| |||| |||| ||||| ||| |||||||||||||||||||| || ||| | Sbjct 83206 CCATTCATGCAAGTCGCTACTTATGCGAAAAGGAATTTCGCTACCTTAGAACAATTAGAG 83265 Query 136 TTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCAT--CA 193 |||||| ||||||| || ||||||| || | ||||| || ||||| | | | Sbjct 83266 TTACGGTCGCCGTTAACTAGGGCTTCCATTCAAAGCTT----ATAACTAACACTTTTCCT 83321 Query 194 ATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGA 253 | ||||||| |||||| ||||| |||| || |||||| || || | || ||||| Sbjct 83322 TCTGACCTTCCAGCACCGAGCAGGTGTCAAACTCTATACATCGTGTTACCACTTAGCAGA 83381 Query 254 GTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCT-TCGACCGGCATGAGCTTA 312 || ||| |||||||||||||||||| | |||||||| | ||| | | | | | | Sbjct 83382 GTCATGTCTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGTCG-CTTTCCTAATCAAA 83440 Query 313 CGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGC 372 || || ||||| | ||||||||||||||||| | | |||||| Sbjct 83441 ---AGATAGGAAATCACC------------CATTCTCCCGAAGTTACGGGGTCATTTTGC 83485 Query 373 CTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTAC 418 | ||||| ||| | |||| |||||||||||| |||| |||||| Sbjct 83486 CGAGTTCTTTCGACATGGTTCCCTCAAGCGCCTTAGTATACTCTAC 83531 >seq11887 Length=32656 Score = 188 bits (208), Expect = 2e-45 Identities = 289/406 (71%), Gaps = 26/406 (6%) Strand=Plus/Plus Query 17 CTTCACAGCGATTTCAATTTCACTGAGTCTCGGGT-GGAGACAGCGCCGCCATCGTTACG 75 |||||| | || ||||||||||||| || || | ||||||| || || ||||||| Sbjct 16411 CTTCACGGAGAATTCAATTTCACTG-GT-TCATTTCGGAGACAACGAGGCAGTCGTTACA 16468 Query 76 CCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTG 135 |||||| |||| |||| ||||| ||| |||||||||||||||||||| || ||| | Sbjct 16469 CCATTCATGCAAGTCGCTACTTATGCGAAAAGGAATTTCGCTACCTTAGAACAATTAGAG 16528 Query 136 TTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCAT--CA 193 |||||| ||||||| || ||||||| || | ||||| || ||||| | | | Sbjct 16529 TTACGGTCGCCGTTAACTAGGGCTTCCATTCAAAGCTT----ATAACTAACACTTTTCCT 16584 Query 194 ATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGA 253 | ||||||| |||||| ||||| |||| || |||||| || || | || ||||| Sbjct 16585 TCTGACCTTCCAGCACCGAGCAGGTGTCAAACTCTATACATCGTGTTACCACTTAGCAGA 16644 Query 254 GTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCT-TCGACCGGCATGAGCTTA 312 || ||| |||||||||||||||||| | |||||||| | ||| | | | | | | Sbjct 16645 GTCATGTCTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGTCG-CTTTCCTAATCAAA 16703 Query 313 CGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGC 372 || || ||||| | ||||||||||||||||| | | |||||| Sbjct 16704 ---AGATAGGAAATCACC------------CATTCTCCCGAAGTTACGGGGTCATTTTGC 16748 Query 373 CTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTAC 418 | ||||| ||| | |||| |||||||||||| |||| |||||| Sbjct 16749 CGAGTTCTTTCGACATGGTTCCCTCAAGCGCCTTAGTATACTCTAC 16794 >seq15243 Length=83818 Score = 141 bits (156), Expect = 2e-31 Identities = 113/136 (83%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| | || ||||||| ||| ||| ||||||| ||| |||||| Sbjct 56427 GCATCTTCACAGACGTGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 56368 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||||| ||||||||||||||||||||||||||||||||| |||||| ||||| Sbjct 56367 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACTTTAGGATCGTTA 56308 Query 133 TTGTTACGGCCGCCGT 148 | |||||| | ||||| Sbjct 56307 TAGTTACGACTGCCGT 56292 >seq14741 Length=65290 Score = 116 bits (128), Expect = 9e-24 Identities = 84/97 (87%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 33 ATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTACGCCATTCGTGCAGGTCGG 92 ||||||| ||| ||| ||||||| ||| ||||||||||| ||||||| |||||| Sbjct 19890 ATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGG 19831 Query 93 AACTTACCCGACAAGGAATTTCGCTACCTTAGGACCG 129 ||||||||||||||||||||||||||||||||||||| Sbjct 19830 AACTTACCCGACAAGGAATTTCGCTACCTTAGGACCG 19794 >seq11649 Length=40817 Score = 116 bits (128), Expect = 9e-24 Identities = 108/133 (81%), Gaps = 3/133 (2%) Strand=Plus/Plus Query 29 TTCAATTTCACTGAGTCTCGGGT-GGAGACAGCGCCGCCATCGTTACGCCATTCGTGCAG 87 ||||||||||||| || || | |||||||||| || ||||||| |||||| ||||| Sbjct 29411 TTCAATTTCACTG-GT-TCATTTCGGAGACAGCGGGGCAGTCGTTACACCATTCATGCAG 29468 Query 88 GTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCCG 147 |||| ||||| ||| ||||||||||||||||||||||| ||| ||||||| ||||| Sbjct 29469 GTCGCTACTTATGCGAAAAGGAATTTCGCTACCTTAGGACAATTAGAGTTACGGTCGCCG 29528 Query 148 TTTACCGGGGCTT 160 || || |||||| Sbjct 29529 TTAACTAGGGCTT 29541 Score = 75.2 bits (82), Expect = 3e-11 Identities = 61/74 (82%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 345 TTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCC 404 ||||||||||||||||| | | ||||||| ||||||||| | |||| ||||||||| Sbjct 29570 TTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCCCTCAAGCGCT 29629 Query 405 TTGGTATTCTCTAC 418 || |||| |||||| Sbjct 29630 TTAGTATACTCTAC 29643 >seq10365 Length=17182 Score = 107 bits (118), Expect = 5e-21 Identities = 82/97 (85%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 27 ATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTACGCCATTCGTGCA 86 || || ||||||| ||| ||| ||||||| ||| ||||||||||| ||||||| Sbjct 2 ATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCG 61 Query 87 GGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTA 123 ||||||||||||||||||||||||||||||||||||| Sbjct 62 GGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTA 98 >seq15239 Length=86026 Score = 98.7 bits (108), Expect = 3e-18 Identities = 124/170 (73%), Gaps = 4/170 (2%) Strand=Plus/Plus Query 135 GTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTT----AGCTAACCCCA 190 ||||||||| ||||| |||||||||||| || ||| | | | || | ||| Sbjct 42426 GTTACGGCCACCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCAAC 42485 Query 191 TCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGC 250 | || |||||||| ||| |||||||||||| ||| |||| | ||| || ||||| Sbjct 42486 TTCCTTGACCTTCCGTCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGC 42545 Query 251 AGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 300 ||| |||||||||| ||||||||||| |||||||| |||||||| Sbjct 42546 GGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTTCGACC 42595 >seq37443 Length=1516 Score = 77.0 bits (84), Expect = 8e-12 Identities = 63/77 (82%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 343 CCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCG 402 ||||||||||||||||||| || ||||||| |||||||| ||||| |||| || Sbjct 1515 CCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCC 1456 Query 403 CCTTGGTATTCTCTACC 419 ||| ||||||||||||| Sbjct 1455 CCTAGGTATTCTCTACC 1439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260231530496