Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq15179 273 5e-71 seq15859 192 1e-46 seq11887 192 1e-46 seq15243 165 2e-38 seq15239 152 1e-34 seq14741 143 6e-32 seq10365 132 1e-28 seq11649 107 4e-21 >seq15179 Length=81045 Score = 273 bits (302), Expect = 5e-71 Identities = 286/376 (76%), Gaps = 20/376 (5%) Strand=Plus/Minus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 ||| | |||||||||| | || | ||||||||||| ||| || ||||||| | | Sbjct 54230 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 54171 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 ||||||| || ||||||| ||||| ||||| |||||||||||||||||||||||||| Sbjct 54170 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 54111 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180 | |||| |||||| |||||||||||||||||||| |||| ||| | |||| Sbjct 54110 CAGTTAGAGTTACTGCCGCCGTTTACTGGGGCTTCCATTCAAAGCT--------TATAAC 54059 Query 181 AGATCCCCTT--AACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGA 238 | | |||| |||||||||||||||||||| ||||| ||||||||||| || | | Sbjct 54058 ACTTTTCCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA 53999 Query 239 CTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTC 298 ||||||||| ||||||||||| |||||||||||| ||| | | ||| || | | Sbjct 53998 CTTAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCC 53939 Query 299 ------ATAGACAG----GCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTC 348 | ||| || |||||||||||||| ||||||||||||||||||||||||||| Sbjct 53938 TAATCAAAAGATAGGAGAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTC 53879 Query 349 CTTAACAATAGTTCTC 364 ||| || |||||| Sbjct 53878 CTTCGACATGGTTCTC 53863 >seq15859 Length=140313 Score = 192 bits (212), Expect = 1e-46 Identities = 257/353 (73%), Gaps = 17/353 (5%) Strand=Plus/Plus Query 11 CTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTACGC 70 |||||| | || | ||||||||| | || ||| |||||| | | ||||||| | Sbjct 83148 CTTCACGGAGAATTCAATTTCACTGGTTC-ATTTCGGAGACAACGAGGCAGTCGTTACAC 83206 Query 71 CTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGT 130 | ||| ||| |||| ||||| ||| |||||||||||||||||||| || ||| ||| Sbjct 83207 CATTCATGCAAGTCGCTACTTATGCGAAAAGGAATTTCGCTACCTTAGAACAATTAGAGT 83266 Query 131 TACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCCCCT- 189 ||||| ||||||| ||| |||||| |||| |||| || |||||| | ||| Sbjct 83267 TACGGTCGCCGTTAACTAGGGCTTCCATTCAAAGCTT--AT--AACTAACACTTTTCCTT 83322 Query 190 -TAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAA 248 | |||||||||||||| ||||| |||| ||||||||||| || | |||||||||| Sbjct 83323 CTGACCTTCCAGCACCGAGCAGGTGTCAAACTCTATACATCGTGTTACCACTTAGCAGAG 83382 Query 249 ACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTC------ATAG 302 | ||| ||||| |||||||||||| ||| | | || || | | | || Sbjct 83383 TCATGTCTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGTCGCTTTCCTAATCAAAAG 83442 Query 303 ACAGG----CACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTT 351 | ||| ||||| ||||||| ||||||||||||||||||||||||||| || Sbjct 83443 ATAGGAAATCACCCATTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCTTT 83495 >seq11887 Length=32656 Score = 192 bits (212), Expect = 1e-46 Identities = 257/353 (73%), Gaps = 17/353 (5%) Strand=Plus/Plus Query 11 CTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTACGC 70 |||||| | || | ||||||||| | || ||| |||||| | | ||||||| | Sbjct 16411 CTTCACGGAGAATTCAATTTCACTGGTTC-ATTTCGGAGACAACGAGGCAGTCGTTACAC 16469 Query 71 CTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGT 130 | ||| ||| |||| ||||| ||| |||||||||||||||||||| || ||| ||| Sbjct 16470 CATTCATGCAAGTCGCTACTTATGCGAAAAGGAATTTCGCTACCTTAGAACAATTAGAGT 16529 Query 131 TACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCCCCT- 189 ||||| ||||||| ||| |||||| |||| |||| || |||||| | ||| Sbjct 16530 TACGGTCGCCGTTAACTAGGGCTTCCATTCAAAGCTT--AT--AACTAACACTTTTCCTT 16585 Query 190 -TAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAA 248 | |||||||||||||| ||||| |||| ||||||||||| || | |||||||||| Sbjct 16586 CTGACCTTCCAGCACCGAGCAGGTGTCAAACTCTATACATCGTGTTACCACTTAGCAGAG 16645 Query 249 ACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTC------ATAG 302 | ||| ||||| |||||||||||| ||| | | || || | | | || Sbjct 16646 TCATGTCTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGTCGCTTTCCTAATCAAAAG 16705 Query 303 ACAGG----CACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTT 351 | ||| ||||| ||||||| ||||||||||||||||||||||||||| || Sbjct 16706 ATAGGAAATCACCCATTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCTTT 16758 >seq15243 Length=83818 Score = 165 bits (182), Expect = 2e-38 Identities = 118/136 (87%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | | | ||||||||||| || | ||||||||||||| |||||| Sbjct 56427 GCATCTTCACAGACGTGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 56368 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| Sbjct 56367 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACTTTAGGATCGTTA 56308 Query 127 TAGTTACGGCCGCCGT 142 |||||||| | ||||| Sbjct 56307 TAGTTACGACTGCCGT 56292 >seq15239 Length=86026 Score = 152 bits (168), Expect = 1e-34 Identities = 176/233 (76%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGC-TC---TAACAG 182 ||||||||||| ||||| || ||||||| || | ||| | | | || | || Sbjct 42424 TAGTTACGGCCACCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCA 42483 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242 | |||| ||||||| ||| |||||||||||||| || |||||| ||||| |||||| Sbjct 42484 ACTTCCTTGACCTTCCGTCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 42543 Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCATAG 302 || || ||||||||||||||||||||||||| |||||| || || || || ||| | Sbjct 42544 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTTCGACC-CCCATTG 42602 Query 303 ACA---GGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 | |||||| |||||||| | ||||||||| |||||| ||||||||||| Sbjct 42603 TGAGGGGGCACCTCTTCTCCCGAGGTTACGGGGCTATTTTGTCGAGTTCCTTA 42655 >seq14741 Length=65290 Score = 143 bits (158), Expect = 6e-32 Identities = 90/97 (93%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 27 ATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGG 86 ||||||||||| || | ||||||||||||| |||||||||||||||||||||||||| Sbjct 19890 ATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGG 19831 Query 87 AACTTACCCGACAAGGAATTTCGCTACCTTAGGACCG 123 ||||||||||||||||||||||||||||||||||||| Sbjct 19830 AACTTACCCGACAAGGAATTTCGCTACCTTAGGACCG 19794 >seq10365 Length=17182 Score = 132 bits (146), Expect = 1e-28 Identities = 84/91 (92%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 27 ATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGG 86 ||||||||||| || | ||||||||||||| |||||||||||||||||||||||||| Sbjct 8 ATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGG 67 Query 87 AACTTACCCGACAAGGAATTTCGCTACCTTA 117 ||||||||||||||||||||||||||||||| Sbjct 68 AACTTACCCGACAAGGAATTTCGCTACCTTA 98 >seq11649 Length=40817 Score = 107 bits (118), Expect = 4e-21 Identities = 114/147 (78%), Gaps = 4/147 (3%) Strand=Plus/Plus Query 11 CTTCACCGGGA-TTA--CAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTA 67 |||||| | || ||| ||||||||| | || ||| ||||||| | | |||||| Sbjct 29396 CTTCACGGAGAATTATTCAATTTCACTGGTTC-ATTTCGGAGACAGCGGGGCAGTCGTTA 29454 Query 68 CGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTAT 127 | || ||| ||| ||||| ||||| ||| ||||||||||||||||||||||| ||| Sbjct 29455 CACCATTCATGCAGGTCGCTACTTATGCGAAAAGGAATTTCGCTACCTTAGGACAATTAG 29514 Query 128 AGTTACGGCCGCCGTTTACTGGGGCTT 154 |||||||| ||||||| ||| |||||| Sbjct 29515 AGTTACGGTCGCCGTTAACTAGGGCTT 29541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1061920985088