Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq12481 421 2e-115 seq16269 233 6e-59 seq45077 197 4e-48 seq15849 120 9e-25 seq16080 89.7 2e-15 seq16177 78.8 3e-12 seq44996 77.0 1e-11 seq14707 75.2 3e-11 >seq12481 Length=43633 Score = 421 bits (466), Expect = 2e-115 Identities = 394/497 (79%), Gaps = 3/497 (1%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| ||||||||||||||||| |||||| ||||||||||| ||||||||| Sbjct 39170 TACGTTCGCAAGAATGAAACTCAAAGGAATTAACGGGGGCCCGCACAAGCAGTGGAGCAT 39229 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 ||||||||||| || |||| ||| |||||||||| | |||||||| | || |||| Sbjct 39230 GTGGTTTAATTAGATGCAAAGCGGAGAACCTTACTAGGGCTTGACATGCCGCGAATCCTC 39289 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 | || | ||||| | || |||| | || | ||||||| ||||||| ||||||||| Sbjct 39290 TTGAAAGAGAGGGGTGCC-TTCGAGA-ACGCGGACACAGGTGGTGCATGGCTGTCGTCAG 39347 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 |||||| ||| || ||||||||||||||||||||||||| ||||||| | |||||||| Sbjct 39348 CTCGTGCCGTAAGGTGTTGGGTTAAGTCCCGCAACGAGCACAACCCTCGTGTTTAGTTGC 39407 Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAC 300 || | || |||| || || || | ||||| |||||| || ||||||||||||| ||| Sbjct 39408 CAACGTTGAGTTTGGAACCCTGAACAGACTGTCGGTGATAAGCCGGAGGAAGGTGAGGAT 39467 Query 301 GACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATAC 360 |||||||| ||||||||||||||||| ||||| |||||||||||||||||| | || Sbjct 39468 GACGTCAAGTCATCATGCCCCTTATGCCATGGGCGACACACGTGCTACAATGGCCGGGAC 39527 Query 361 AAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTG 420 |||||| |||| |||||||| ||| || |||| ||| || ||||||||||||| Sbjct 39528 AAAGGGTCGCGATCCCGCGAGGGTGAGCTAACCCCAAAAACCCGTCCTCAGTTCGGATTT 39587 Query 421 TAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCTA 479 || |||||||||| || ||||||| ||||||||||||||| | | | ||| | Sbjct 39588 CAGGCTGCAACTCGCCTGCATGAAGCCAGAATCGCTAGTAATCACCGGTTTGCCATACGG 39647 Query 480 CGGTGAATACGTTCCCG 496 |||||||| |||||||| Sbjct 39648 CGGTGAATTCGTTCCCG 39664 >seq16269 Length=636919 Score = 233 bits (258), Expect = 6e-59 Identities = 211/264 (80%), Gaps = 1/264 (0%) Strand=Plus/Plus Query 234 TAGTTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGG 293 ||||||||| | || |||| || || || | |||||||||||| || ||||||||||| Sbjct 488146 TAGTTGCCAACGTTGAGTTTGGAACCCTGAACAGACTGCCGGTGATAAGCCGGAGGAAGG 488205 Query 294 TGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGG 353 || ||| |||||||| ||||||||||||||||| ||||| |||||||||||||||||| Sbjct 488206 TGAGGATGACGTCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGG 488265 Query 354 ACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTT 413 | | |||||| ||| |||||||| ||| || |||| ||| ||| ||||||| Sbjct 488266 CCGGGAGAAAGGGTCGCGGTCCCGCGAGGGTGAGCTAACCCCAAAAACCTGTCCTCAGTT 488325 Query 414 CGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG- 472 ||||||| || |||||||||| || ||||||| ||||||||||||||| | | |||| Sbjct 488326 CGGATTGCAGGCTGCAACTCGCCTGCATGAAGCCGGAATCGCTAGTAATAGCCGGTCAGC 488385 Query 473 CATGCTACGGTGAATACGTTCCCG 496 ||| | |||||||| |||||||| Sbjct 488386 CATACGGCGGTGAATTCGTTCCCG 488409 >seq45077 Length=170547 Score = 197 bits (218), Expect = 4e-48 Identities = 186/236 (79%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATG 326 ||||||| |||| | || ||||| ||||||||| |||||||| || |||| |||||||| Sbjct 59439 GACTGCCAGTGATATACTGGAGGGAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATG 59498 Query 327 ATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAA 386 ||||| |||||||||||||||||| | ||||| ||| ||| | | | ||| | Sbjct 59499 GGCTGGGCCACACACGTGCTACAATGGCAATTACAATGGGAAGCAAGGCTGTAAGGCGGA 59558 Query 387 GCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGC 446 || ||||| || ||| ||||||||||||||| |||||||||||| | |||||| Sbjct 59559 GCGAATCCGGAAAGATTGC-CTCAGTTCGGATTGTTCTCTGCAACTCGAGAACATGAAGT 59617 Query 447 TGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTCCCGCTCCCT 502 |||||||||||||||||| ||||||||||| ||||||||| || |||| |||| Sbjct 59618 TGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATATGTACCCGGGCCCT 59673 Score = 172 bits (190), Expect = 2e-40 Identities = 180/234 (77%), Gaps = 17/234 (7%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| ||||||||||||||||||||||| || |||||||||||||||||| Sbjct 58795 TACGGTCGCAAGACCGAAACTCAAAGGAATTGACGGGGGCCTGCACAAGCGGTGGAGCAT 58854 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| ||||||| | |||||||||| ||||||| | ||| | Sbjct 58855 GTGGTTTAATTCGATACAACGCGCAAAACCTTACCAGCCCTTGACA---TATGA----AC 58907 Query 121 TAGAGATAGAGGTTTCCCCTTCGG---GGGACAGAGT----GACAGGTGATGCATGGTTG 173 ||| | | | ||| ||| || || || | ||||||| ||||||| || Sbjct 58908 AAGA---AAACCTGTCCTTAACGGGATGGTACTGACTTTCATACAGGTGCTGCATGGCTG 58964 Query 174 TCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCT 227 ||||||||||||||||||||||||| ||| |||||| |||||||| |||||| Sbjct 58965 TCGTCAGCTCGTGTCGTGAGATGTTTGGTCAAGTCCTCTAACGAGCGAAACCCT 59018 >seq15849 Length=144940 Score = 120 bits (132), Expect = 9e-25 Identities = 87/101 (86%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||||| | ||||||||||||||||| ||| || ||||||||||||||| |||||||| Sbjct 46622 CGCAAGAATAAAACTCAAAGGAATTGATGGGAGCCAGCACAAGCGGTGGAGGATGTGGTT 46681 Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACAT 107 |||||||| |||| | ||||||||||||||| ||||||| Sbjct 46682 TAATTCGATGCAAAGTGAAGAACCTTACCAAGGTTTGACAT 46722 >seq16080 Length=224580 Score = 89.7 bits (98), Expect = 2e-15 Identities = 51/52 (98%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 17 AAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTA 68 |||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 193577 AAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTTA 193628 >seq16177 Length=244617 Score = 78.8 bits (86), Expect = 3e-12 Identities = 54/61 (89%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 156 ACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAAC 215 ||||||| ||||||| ||||||||||| ||| ||| || |||||||||||||||||| || Sbjct 41860 ACAGGTGGTGCATGGCTGTCGTCAGCTTGTGCCGTAAGGTGTTGGGTTAAGTCCCGCTAC 41919 Query 216 G 216 | Sbjct 41920 G 41920 >seq44996 Length=30919 Score = 77.0 bits (84), Expect = 1e-11 Identities = 96/133 (72%), Gaps = 9/133 (7%) Strand=Plus/Plus Query 233 TTAGTTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAG 292 |||||||| | | || | || || || || | |||| |||||| || ||| ||||| Sbjct 24905 TTAGTTGCTAACGTTGACTTTGGAACCCTGAACAGACTATCGGTGATAAGCCGAAGGAAA 24964 Query 293 GTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATG 352 ||| ||| |||||||| ||||||||||| ||||| ||||| |||||||||| Sbjct 24965 GTGAGGATGACGTCAAGTCATCATGCCC---------TGGGCGACACATGTGCTACAATA 25015 Query 353 GACAATACAAAGG 365 | | ||||||| Sbjct 25016 GCCGGGACAAAGG 25028 >seq14707 Length=65487 Score = 75.2 bits (82), Expect = 3e-11 Identities = 65/81 (80%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 246 TTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGT 305 || |||| || || |||| |||| ||||||| || || |||||||||| | | ||||| Sbjct 8399 TTGAGTTTGGAACCCTAAACAGACTACCGGTGATAAGCCAGAGGAAGGTGAGAAAGACGT 8340 Query 306 CAAATCATCATGCCCCTTATG 326 ||| ||| ||||||||||||| Sbjct 8339 CAAGTCAGCATGCCCCTTATG 8319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503321876480