Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq10081 374 1e-101 seq13714 309 5e-82 seq12324 304 2e-80 seq16010 279 8e-73 seq16013 172 9e-41 seq14347 86.0 1e-14 >seq10081 Length=34917 Score = 374 bits (414), Expect = 1e-101 Identities = 237/257 (92%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11674 ACTCGCTGGCTCTGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 11733 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||| | ||| || || | |||||||||||||||||||| Sbjct 11734 CCTGTTATTGCCTCAAACTTCCGTCTGCTAGACGCAGACAGTCCCTCTAAGAAGCCAGCG 11793 Query 122 ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 181 | || | | || ||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 11794 ATCAGCAAAAGCCGAACGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 11853 Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 11854 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAAAATCATGAA 11913 Query 242 AGAGCTATCAATCTGTC 258 ||||||||||||||||| Sbjct 11914 AGAGCTATCAATCTGTC 11930 >seq13714 Length=42945 Score = 309 bits (342), Expect = 5e-82 Identities = 225/259 (87%), Gaps = 4/259 (2%) Strand=Plus/Plus Query 3 CTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGAC 62 |||| || | | ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 12067 CTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGAC 12126 Query 63 CTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCA 122 ||||||||||||||||||||| | | ||||||| | |||||||||||||||||| ||| Sbjct 12127 CTGTTATTGCCTCAAACTTCCGTGGCCTGGAAGGCCATAGTCCCTCTAAGAAGCTAGCTG 12186 Query 123 CCAACCATAGTCGATGGG---GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 | || | || | | |||| |||||||| | ||||||||||||||| ||||||| Sbjct 12187 CGAAGGA-AGCCCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATT 12245 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 12246 AACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACAACCCATAGAATCAAG 12305 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||| ||| |||||| Sbjct 12306 AAAGAGCTCTCAGTCTGTC 12324 Score = 279 bits (308), Expect = 8e-73 Identities = 219/260 (84%), Gaps = 4/260 (2%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 7431 ACTCGTTGAATACATCAGTGTAGCACGCGTGCGGCCCAGAACATCTAAAGGCATCACAGA 7490 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||| | | ||||||| | ||| |||||||||||||| ||| Sbjct 7491 CCTGTTATTGCCTCAAACTTCCGTGGCCTGGAAGGCCATAATCCCTCTAAGAAGCTAGCT 7550 Query 122 ACCAACCATAGTCGATGGG---GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178 | || | || | | |||| |||||||| | ||||||||||| ||| |||||| Sbjct 7551 GCGAAGGA-AGCCCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCATTAACGGAAT 7609 Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238 |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| Sbjct 7610 TAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCATCACCACCCATAGAATCAA 7669 Query 239 GAAAGAGCTATCAATCTGTC 258 ||| ||||| | | | |||| Sbjct 7670 GAAGGAGCTCTTAGTTTGTC 7689 >seq12324 Length=50681 Score = 304 bits (336), Expect = 2e-80 Identities = 215/245 (88%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| Sbjct 11858 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACATACCAGTTATTGCCTC 11917 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCG 135 |||||||| | | ||||||| | |||||||||||||||||| ||| | || || | Sbjct 11918 AAACTTCCGTGGCCTGGAAGGCCATAGTCCCTCTAAGAAGCTAGCTGCGAAGGATGCCCT 11977 Query 136 ATGGG--GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 193 | |||| |||||||| | ||||||||||||||| |||||||||||||||||||| Sbjct 11978 CCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCG 12037 Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | Sbjct 12038 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAGT 12097 Query 254 CTGTC 258 ||||| Sbjct 12098 CTGTC 12102 >seq16010 Length=173124 Score = 279 bits (308), Expect = 8e-73 Identities = 219/260 (84%), Gaps = 4/260 (2%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 56612 ACTCGTTGAATACATCAGTGTAGCACGCGTGCGGCCCAGAACATCTAAAGGCATCACAGA 56553 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||| | | ||||||| | ||| |||||||||||||| ||| Sbjct 56552 CCTGTTATTGCCTCAAACTTCCGTGGCCTGGAAGGCCATAATCCCTCTAAGAAGCTAGCT 56493 Query 122 ACCAACCATAGTCGATGGG---GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178 | || | || | | |||| |||||||| | ||||||||||| ||| |||||| Sbjct 56492 GCGAAGGA-AGCCCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCATTAACGGAAT 56434 Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238 |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| Sbjct 56433 TAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCATCACCACCCATAGAATCAA 56374 Query 239 GAAAGAGCTATCAATCTGTC 258 ||| ||||| | | | |||| Sbjct 56373 GAAGGAGCTCTTAGTTTGTC 56354 Score = 145 bits (160), Expect = 1e-32 Identities = 96/105 (91%), Gaps = 1/105 (1%) Strand=Plus/Minus Query 155 TAAGGTCTCGT-TCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGC 213 ||||| | ||| |||||| ||||||||||||||||| || |||||| ||||||||||||| Sbjct 52205 TAAGGGCACGTGTCGTTAACGGAATTAACCAGACAACTCGCTCCACTAACTAAGAACGGC 52146 Query 214 CATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||||||||||| ||| |||||| Sbjct 52145 CATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAGTCTGTC 52101 >seq16013 Length=170587 Score = 172 bits (190), Expect = 9e-41 Identities = 109/118 (92%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 141 GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACC 200 |||| |||||||| | ||||||||||||||| |||||||||||||||||||| || ||| Sbjct 95049 GCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCGTTCTACC 94990 Query 201 AACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| Sbjct 94989 AACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAGTCTGTC 94932 Score = 143 bits (158), Expect = 4e-32 Identities = 95/104 (91%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 156 AAGGTCTCGT-TCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCC 214 |||| | ||| |||||| |||||| |||||||||||| ||||||||||||||||||||| Sbjct 89053 AAGGGCACGTGTCGTTAACGGAATCAACCAGACAAATTGCTCCACCAACTAAGAACGGCC 88994 Query 215 ATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||||||||||||||||| ||| |||||| Sbjct 88993 ATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAGTCTGTC 88950 >seq14347 Length=60713 Score = 86.0 bits (94), Expect = 1e-14 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 185 GACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGA 244 |||||||| ||||||||| || |||| | |||||||| ||| ||||||||||||||||| Sbjct 17804 GACAAATCGCTCCACCAATTATAAACGACTATGCACCATCACACATAGAATCAAGAAAGA 17745 Query 245 GCTATCAATC 254 ||| |||||| Sbjct 17744 GCTCTCAATC 17735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796451965728