Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq10081 468 9e-130 seq16013 381 1e-103 seq16010 356 4e-96 seq12934 78.8 2e-12 >seq10081 Length=34917 Score = 468 bits (518), Expect = 9e-130 Identities = 262/264 (99%), Gaps = 0/264 (0%) Strand=Plus/Plus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 8009 CATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTAT 8068 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8069 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 8128 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8129 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 8188 Query 212 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGC 271 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 8189 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTCCGAGGGACTAAAGGATCGATAGGC 8248 Query 272 CACACTTTCATGGTTTGTATTCAC 295 |||||||||||||||||||||||| Sbjct 8249 CACACTTTCATGGTTTGTATTCAC 8272 >seq16013 Length=170587 Score = 381 bits (422), Expect = 1e-103 Identities = 261/293 (89%), Gaps = 1/293 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | |||||||||||| | | || |||||||||||||||||| ||| |||||||| Sbjct 89227 TACTAGGTTGAATTACCATTGCGAC-ACTGTCATCAGTAGGGTAAAAATAATCTGTCTCA 89285 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||| | ||||||||||||||||| ||| || Sbjct 89286 CGACGGTCTAAACCCAGCTCACGTTCCCTACTGATGGGTGAACAATCCAACACTTGGTGA 89345 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 89346 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGACGGATCAAAAAGCAACGTCGCTAT 89405 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||| | Sbjct 89406 GAACGCTTGGCTGCCACAAGCTAGTTATCCCTGTTGTAACTTTTCTGACACCTCTAGCTT 89465 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 |||||| ||| || ||||||||||| |||||||| |||||| |||| |||||| Sbjct 89466 CAAATTCCGAAGGTCTAAAGGATCGTTAGGCCACGCTTTCACGGTTCGTATTC 89518 Score = 356 bits (394), Expect = 4e-96 Identities = 256/293 (87%), Gaps = 8/293 (3%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | |||||||||||| | || ||||||||||||||||||||||||||||||| Sbjct 85533 TACTAGGTTGAATTACCATTGCAAC-ACTGTCATCAGTAGGGTAAAACTAACCTGTCTCA 85591 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 |||||||||||||||||||||||||| |||| |||||||| |||||||| ||| || Sbjct 85592 CGACGGTCTAAACCCAGCTCACGTTCCTTATTGATGGGTGAATAATCCAACACTTGGTGA 85651 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 85652 ATTCTGCTTCACAACGATAGGAAGAGGCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 85711 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct 85712 GAACGCTTGGCTGCCACAAGCCAGTTATCCCT-TGGTAACTTTTCTGACACCTCTAG--- 85767 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 ||||||| || ||||||||||| |||||||| |||| | |||| |||||| Sbjct 85768 ---ATTTCGAAGGTCTAAAGGATCGTTAGGCCACGCTTTTACGGTTCGTATTC 85817 >seq16010 Length=173124 Score = 356 bits (394), Expect = 4e-96 Identities = 256/293 (87%), Gaps = 8/293 (3%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | |||||||||||| | || ||||||||||||||||||||||||||||||| Sbjct 52378 TACTAGGTAGAATTACCATTGCAAC-ACTGTCATCAGTAGGGTAAAACTAACCTGTCTCA 52436 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 |||||||||||||||||||||||||| |||| |||||||| |||||||| ||| || Sbjct 52437 CGACGGTCTAAACCCAGCTCACGTTCCTTATTGATGGGTGAATAATCCAACACTTGGTGA 52496 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 52497 ATTCTGCTTCACAACGATAGGAAGAGGCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 52556 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct 52557 GAACGCTTGGCTGCCACAAGCCAGTTATCCCT-TGGTAACTTTTCTGACACCTCTAG--- 52612 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 ||||||| || ||||||||||| |||||||| |||| | |||| |||||| Sbjct 52613 ---ATTTCGAAGGTCTAAAGGATCGTTAGGCCACGCTTTTACGGTTCGTATTC 52662 >seq12934 Length=42260 Score = 78.8 bits (86), Expect = 2e-12 Identities = 58/68 (85%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 226 TGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGT 285 || |||||||||| ||||||| ||| | ||||||||||| |||||||| |||||| ||| Sbjct 38977 TGACACCTCTAGCTTCAAATTCCGAAGATCTAAAGGATCGTTAGGCCACGCTTTCACGGT 39036 Query 286 TTGTATTC 293 | |||||| Sbjct 39037 TCGTATTC 39044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854014768128