Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq15179 109 6e-22 seq15243 95.1 1e-17 seq14741 91.5 2e-16 seq10365 80.6 3e-13 seq11649 75.2 1e-11 >seq15179 Length=81045 Score = 109 bits (120), Expect = 6e-22 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 ||||||||| |||| || |||| || |||||||||| || | | ||||||||| | Sbjct 54255 CGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCG 54196 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 | || | ||||||| |||||||||||||||||||| ||||| | Sbjct 54195 GGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGC 54136 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTANNNNNNNNNNNNNNGTTTACTGGGGCTTC 202 |||||||||||||||||||||||||| |||| ||||||||||||||| Sbjct 54135 GACAAGGAATTTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACTGGGGCTTC 54076 >seq15243 Length=83818 Score = 95.1 bits (104), Expect = 1e-17 Identities = 110/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| || |||| || |||||||||| || | ||||||| ||| Sbjct 56456 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACGTGTCTATTTCACCGAG 56397 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | ||||||| ||| || ||||||| |||||||||||||||| Sbjct 56396 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 56338 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||| |||||| ||||| Sbjct 56337 ACAAGGAATTTCGCTACTTTAGGATCGTTA 56308 >seq14741 Length=65290 Score = 91.5 bits (100), Expect = 2e-16 Identities = 55/58 (95%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCG 170 ||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 19851 TACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCG 19794 >seq10365 Length=17182 Score = 80.6 bits (88), Expect = 3e-13 Identities = 49/52 (94%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTA 164 ||| || ||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 47 TACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTA 98 >seq11649 Length=40817 Score = 75.2 bits (82), Expect = 1e-11 Identities = 50/56 (89%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 168 |||||||||| ||||||||| ||||| ||| ||||||||||||||||||||||| Sbjct 29453 TACACCATTCATGCAGGTCGCTACTTATGCGAAAAGGAATTTCGCTACCTTAGGAC 29508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546960988512